Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02508 ATGGCCGGCGAACTCGCCGGAGACCACACGCCGGAGCTCCTCTGTCTGGTCCACGACATCGCCGGAATGTGCGCCGGCTCCTCCTCCGCCGCGCCCATTGCCGCCGACGCCATGTTCCGCAAGGACTGCACCGATCTGGTTCGCCGGATCTCCCTCCTCACCCACTTGTTTGAGGAGATTAGAGAACTCAACAACAGCAACAGCAACAGCAACAATGCTGTCGCTTCCGCTTCCTCGTCTTCCTCCTCCTCCTCTTCCGCCGCCTCTTGGTCCTCTGATCTCGTCTGCGCTCTCCACTCCGCAAGACGCTTGCTTTCCGTCGCCAGAATCTTCCGTTCCAATTGCTCCTCTGATGGAGCTGCAAAGACCATTGTCTTCCAATTTCAGTGTGTAACATGGAAATTGGAGAAACTGTTGAGTAATTTGCCGTATGACAATTTGGACATCTCAGAGGAAGTCAAAGAACAGGTGGATTTGGTGAGAACGCAATTGAAACGAGCCACAGAAAAATACGGGTTTATGATTTCAAAGATGCCATCCCATGAACTATCCCAGCCACTGACTGAAGAAATTAGCCAGGTTCTTGGTAAATCTGTGGGTGGATTGTACAAACAACACAGCTGTCCGGAAAATTTATCAGAACTAGACAGCATTTCTAAAACCAACGGAGAGAATAATTCCAGCACAAATCGGGTTGGATCTCGCTTGGAAAGAGCAAGGAGCATCCCTGATTCTGAAGTTCTTTCATTGAATGAATCTGATCCTGAAAGTCAAGAAATTTCTGAGACAAAGAGTCTACCTGAGGTTAAAAAGTCTGAAGCAACTGTGTTTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCTGTTATTGTGGCGACTGGTCAGACGTATGAGAGATCTTACATACAGAGATGGATAGATTGTGGAAACACAACATGTCCGAAGACTCAGCAGAAGCTCCAACATTTGACCCTCACACCAAATTATGTTTTAAGGAGCCTTATTTCTCAGTGGTGCATAGAGCACAACATTGAGCAGCCAACAGGACTAACTAATGGGAAAATAAAGAAGAGTGATGGGTCGTTCAGAGATGTTACGGGTGACATAGCAGCAATTGAAGCTCTGGTACGGAAGCTCTCCAGCCAGTCTGTTGAGGAGCGCAGAGCAGGTGTTACGGAAATTCGATCACTATCCAAACGAAGCACTGACAATAGGATACTAATTGCTGAAGCCGGAGCAATTCCAGTTCTAGTCAACCTTCTAACATCTGAAGATGTATTGACGCAAGACAATGCTGTTACTTCAATTCTCAATCTTTCCATTTATGAAAATAACAAAGGACTTATAATGCTTGCTGGTGCCATTCCATCCATTGTCCAAGTCCTCCGTGCTGGAACCATGGAAGCAAGAGAAAATGCAGCAGCAACCCTCTTCAGCTTGTCACTTGCAGATGAGAACAAAATAATAATTGGCGCGTCAGGAGCCATACCCGCTTTGGTAGAATTGCTCCAAAACGGGAGTCCTAGAGGAAAGAAGGATGCAGCAACAGCATTGTTCAATTTGTGCATTTATCAAGGGAACAAGGGTAGGGCCATTAGAGCAGGGATCATCACAGCATTATTGAAAATGCTTACAGATTCAAGCAAATCAATGGTTGACGAAGCCCTAACAATAATGTCAGTTCTTGCCAGCCACCAAGAAGCAAAAATTGCTATAGTAAAAGCTAGCACTATACCAGTTTTGATAGATCTTTTGAGGACCGGATTGCCTCGCAATAAAGAGAATGCTGCTGCTATTCTTCTTGCCTTGTGCAAGAGGGATGCCGACAATCTTGCTTGTATAAGTAGACTTGGTGCTGTCATACCTCTCTCTGAACTTGCTCGAACTGGTACAGAGAGGGCCAAACGCAAGGCTACTTCTTTATTGGAGCATCTTCGTAAGTTGCAGCAACTTTGA 1971 0.4597 MAGELAGDHTPELLCLVHDIAGMCAGSSSAAPIAADAMFRKDCTDLVRRISLLTHLFEEIRELNNSNSNSNNAVASASSSSSSSSSAASWSSDLVCALHSARRLLSVARIFRSNCSSDGAAKTIVFQFQCVTWKLEKLLSNLPYDNLDISEEVKEQVDLVRTQLKRATEKYGFMISKMPSHELSQPLTEEISQVLGKSVGGLYKQHSCPENLSELDSISKTNGENNSSTNRVGSRLERARSIPDSEVLSLNESDPESQEISETKSLPEVKKSEATVFPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLISQWCIEHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIEALVRKLSSQSVEERRAGVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKIAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDADNLACISRLGAVIPLSELARTGTERAKRKATSLLEHLRKLQQL* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02508 656 Coils Coil 636 656 - -
Lapu3g02508 656 MobiDBLite consensus disorder prediction 214 235 - -
Lapu3g02508 656 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 350 IPR013083 -
Lapu3g02508 656 Pfam U-box domain 278 348 IPR003613 GO:0004842|GO:0016567
Lapu3g02508 656 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Lapu3g02508 656 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 417 459 IPR000225 GO:0005515
Lapu3g02508 656 FunFam RING-type E3 ubiquitin transferase 556 655 - -
Lapu3g02508 656 Pfam Armadillo/beta-catenin-like repeat 489 527 IPR000225 GO:0005515
Lapu3g02508 656 Pfam Armadillo/beta-catenin-like repeat 407 445 IPR000225 GO:0005515
Lapu3g02508 656 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 458 500 IPR000225 GO:0005515
Lapu3g02508 656 SUPERFAMILY RING/U-box 275 351 - -
Lapu3g02508 656 FunFam RING-type E3 ubiquitin transferase 355 555 - -
Lapu3g02508 656 Gene3D - 355 569 IPR011989 -
Lapu3g02508 656 SMART arm_5 447 487 IPR000225 GO:0005515
Lapu3g02508 656 SMART arm_5 570 610 IPR000225 GO:0005515
Lapu3g02508 656 SMART arm_5 406 446 IPR000225 GO:0005515
Lapu3g02508 656 SMART arm_5 529 569 IPR000225 GO:0005515
Lapu3g02508 656 SMART arm_5 488 528 IPR000225 GO:0005515
Lapu3g02508 656 FunFam RING-type E3 ubiquitin transferase 276 351 - -
Lapu3g02508 656 SUPERFAMILY ARM repeat 376 650 IPR016024 -
Lapu3g02508 656 CDD RING-Ubox_PUB 278 330 IPR045210 -
Lapu3g02508 656 MobiDBLite consensus disorder prediction 214 266 - -
Lapu3g02508 656 Gene3D - 573 651 IPR011989 -
Lapu3g02508 656 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 499 541 IPR000225 GO:0005515
Lapu3g02508 656 PANTHER U BOX DOMAIN-CONTAINING 38 652 - -
Lapu3g02508 656 Coils Coil 150 170 - -
Lapu3g02508 656 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02508 Lapu-Chr3 47090585 47094376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02508 37 655 U-box Gene Family AT1G23030 62.963 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02508 - - gmx:100815448 1096.65