Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02494 ATGGCACAGGGGCAAGAGCTGGAGCAGGTGCAATGCTTCGGTCGCAAGAAGACTGCGGTGGCCGTTACCTACTGCAAACGCGGACGCGGTCTCATCAAGATCAACGGCTGCCCCATAGAGCTTGTCGAACCGGAAATCCTCCGGTTCAAGGCCTTTGAGCCGATCCTCCTTCTCGGGAAGAGCCGGTTCGCCGGCGTGGACATGCGAATCCGCGTCAATGGCGGTGGCCATACCTCTCAGATTTACGCCATTCGTCAGAGCATCGCTAAGGCCCTCGTCGCCTTCTACCAGAAGTACGTCGACGAACAGAGCAAGAAGGAGATCAAAGACATCCTCGTCCGCTACGATCGCACGTTGCTTGTTGCGGACCCTAGGCGCTGCGAGCCAAAGAAGTTCGGTGGTCGTGGTGCTCGTGCCAGGTTCCAGAAGTCTTACCGTTGA 441 0.5782 MAQGQELEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGKSRFAGVDMRIRVNGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02494 146 FunFam 40S ribosomal protein S16 3 146 - -
Lapu3g02494 146 Pfam Ribosomal protein S9/S16 14 146 IPR000754 GO:0003735|GO:0005840|GO:0006412
Lapu3g02494 146 PANTHER RIBOSOMAL PROTEIN S9 5 143 IPR000754 GO:0003735|GO:0005840|GO:0006412
Lapu3g02494 146 SUPERFAMILY Ribosomal protein S5 domain 2-like 9 146 IPR020568 -
Lapu3g02494 146 ProSitePatterns Ribosomal protein S9 signature. 74 92 IPR020574 GO:0003735|GO:0005840|GO:0006412
Lapu3g02494 146 Gene3D - 2 146 IPR014721 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02494 Lapu-Chr3 46902217 46903007 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02494 1 146 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 87.671 1.17e-93 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02494 K02960 - gmx:100812117 279.256