Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02492 ATGGCTTGGGGTGACAGTGATAGTTCAAGTTCTCTAGTTAATTGGGGTTCTTCCTGCAAGAGAAAATCTCTTGAAGGTAATTCTAGGCAACTGTGCTCAGGAGGAAGCTCAAGCACTCTTGTACTATCTGAAAATGGTTGTTGGCCTACTGGTCCTGTTGTTCTTAATGCTTCTAGCAACTTAAGTGATGTTAGTATGTTACAACTTTGGAGGATATTACTGTTTCTAGTCCTCCATTATTGCAGAATAGATTGTACCGAGCACCCTATGAATGCGGCTGCATCTTCAGAATATGAACCTACAAGTTGGCATATACCATGTGGTGATGTGAACTATTCCGAAGGTGTACCTACTCCATCCTGGATTGGATCTAGTTCAAATCCCCACTCTTCACCTAACTCTGGCTGGAATTTTAATCATGAAGTCCCAACTGAAAATATGCAAATTCGCCAGGTCTTGATGGCAATGCGGAGGGGTGAGAACTTACGAGCACAGGAATTGTTGGCATTGGAGGAGCGTTTAGGATATGTTAAAATTGGATTGAGTGATGATGTCATTATTAAGTTGATGAAACAACGACTTTACACATCAATCATGACAGACTCTTGTACAGTGTTGGAACCTTGTTGTATATGTCAGTTATGGATGGTGTTTGTCTCAGTATCAGAGGACGTGAAAACTATGAGAATGGAAGAATTTGGTGACGGAGAGAATGTTGGATCATTGGATTGTGGGCATGAGTTTCACAGTGCCTGCATCAAGCAGTGGCTAATGCAGAAGAACATGTGCCCCATTTGCAAAATAACAGCCCTAGCTACGTGA 822 0.4197 MAWGDSDSSSSLVNWGSSCKRKSLEGNSRQLCSGGSSSTLVLSENGCWPTGPVVLNASSNLSDVSMLQLWRILLFLVLHYCRIDCTEHPMNAAASSEYEPTSWHIPCGDVNYSEGVPTPSWIGSSSNPHSSPNSGWNFNHEVPTENMQIRQVLMAMRRGENLRAQELLALEERLGYVKIGLSDDVIIKLMKQRLYTSIMTDSCTVLEPCCICQLWMVFVSVSEDVKTMRMEEFGDGENVGSLDCGHEFHSACIKQWLMQKNMCPICKITALAT* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02492 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 270 IPR013083 -
Lapu3g02492 273 ProSiteProfiles Zinc finger RING-type profile. 209 267 IPR001841 -
Lapu3g02492 273 SMART ring_2 209 266 IPR001841 -
Lapu3g02492 273 SUPERFAMILY RING/U-box 208 269 - -
Lapu3g02492 273 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 125 271 IPR045191 GO:0061630
Lapu3g02492 273 Pfam Ring finger domain 231 267 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02492 Lapu-Chr3 46882881 46885442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02492 148 273 C3H Transcription Factor Family AT2G15530 43.210 5.61e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02492 - K19041 gmx:100809024 155.221