Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02491 ATGGTCTTGATGTCAGAAAATGAAGGTTTGCATGATATGAAGTTCTTATGGGAAAACCATTACTGGGATCCCTCCAATTCTGATAACTCGCGTGAAAGTGAAGAAAACAGCACCAAGTCACCAAAGCAGAAGAATGAAAAGGATGAAGCTCTCGTGAAGAAGAAGCGAAATCGAGAGATGAACAAAGTTAGCAGTGCTGAAGAAAAAGGTGAAAAGAGTCGTGAATCTGATCATGAAATGCACATATGGACTGAGAGAGAAAGGAGAAAGAAAATGAAGAACATGTTCATTAGTCTTCATGCTTTGCTTCCCCATCTTCCTTCTAAGACGGATAAATCAACGGTTGTGGATGAAGCAGTGAGCTACATAAAGAAACTTGAGGGAACCCTGGAAAAGCTAGAGAAACAGAAAGAAGAAAGGGTCCGGCGTGGGTCCGCGTTTGGGTACGAGTCATCACCATCCATGTTTGTGACTACTGCTCAGGGGTTTTCTTCTAATAACAACTTTTCAAACGCAATAATGGGAACTTCTTCAAACGCGCTTTTATTCCCTGCGCAGCAGCCAGAAGGTTTTGATAAAACGTGGGCCTCTTCAAACATGGTGTTGAATGTTTGTGGAGATGAGGCCCAATTCTGCATTTGTGCGGCCCATAAGCCAGGCCTGATGTCCAGCATAGCTTTTGTGCTTGATAAATACAAGATAGACCTCGTGTCTGCCCACATTTCATCCATTGGGAATAGAAATGCAATCATGATTCAAGCTCACGGAAAACGAGCTTCACATGATGCAAATTCAGTGGAAGAAATTTACAGGCAAGCTGCGGGAGAGATTATGCTGTGGATCGCTTAA 849 0.4299 MVLMSENEGLHDMKFLWENHYWDPSNSDNSRESEENSTKSPKQKNEKDEALVKKKRNREMNKVSSAEEKGEKSRESDHEMHIWTERERRKKMKNMFISLHALLPHLPSKTDKSTVVDEAVSYIKKLEGTLEKLEKQKEERVRRGSAFGYESSPSMFVTTAQGFSSNNNFSNAIMGTSSNALLFPAQQPEGFDKTWASSNMVLNVCGDEAQFCICAAHKPGLMSSIAFVLDKYKIDLVSAHISSIGNRNAIMIQAHGKRASHDANSVEEIYRQAAGEIMLWIA* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02491 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 126 IPR011598 GO:0046983
Lapu3g02491 282 MobiDBLite consensus disorder prediction 25 82 - -
Lapu3g02491 282 Coils Coil 116 143 - -
Lapu3g02491 282 CDD bHLH_AtbHLH_like 81 134 IPR045239 -
Lapu3g02491 282 Gene3D - 66 143 IPR036638 GO:0046983
Lapu3g02491 282 SMART finulus 84 132 IPR011598 GO:0046983
Lapu3g02491 282 MobiDBLite consensus disorder prediction 21 82 - -
Lapu3g02491 282 Pfam Helix-loop-helix DNA-binding domain 81 127 IPR011598 GO:0046983
Lapu3g02491 282 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 20 281 IPR044278 GO:0003700|GO:0006355|GO:0009960
Lapu3g02491 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 139 IPR036638 GO:0046983
Lapu3g02491 282 CDD ACT_UUR-ACR-like 213 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02491 Lapu-Chr3 46877067 46878251 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02491 18 282 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 35.644 7.57e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g02491 HLH 8.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02491 - - pvu:PHAVU_003G048000g 397.897