Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02490 ATGGACTTCCTATTGGAAAACCATACAGAAAGTTCTTCTAGTTCTAGTGGCTGTCTTGAAAGTGAGGAAAACAAAAAAATATTAAAGCAACAGCAAGGTGAAATCCTCATGAATAAGATGCAAAATCGAGATATTCTTGATGAAAATGAGAAGAAACTTATCACTAATGATGAAGGAACGTATGAAAAGTATCTGGAAACTAATAATGAAATGCATTTATCAATCGAAAGAGGTAGAAGAAAGAAGATGAAAGAAATGTTTGACGATCTTAGTGATTTACTGCCACAACTTCCTTCTAAGGTTGATAAAGCAACCATAGTCAATGAAGCAGTGAACCACATAAAAAATCTGCAGGAAACCCTCCAAAAGCTAGAGAGAAAGAAACAAGAAAGGGCACAACATAGTCTCAAACAAATTATGGGAACAACTTCAGGTGCAGTTTCAGTATCTGGGAAGCAGAAAGTAACTTTTGACAAAACATGGGCTGCTTCAAACATGGTCTTGAACATTCGTGGAAATGAAGCTCAATTCTCCATTTGCTCAGTCCATAAGCCAGGAATCATGACCAACATTGCTTCAGTGCTGGAGAAGCACAACATAGAACTCATTTCTGCTAGCATTTCAGCCAATGGAAATGGAAATACTTGCATGATTCAAGTCCATGGAAAGCAAGCTTCGGATGCAAATTCAATGGAGGAAACTTACAGAAAAGTTGCTGAAGAGATTATGCCATTGATCGCTTAA 744 0.3723 MDFLLENHTESSSSSSGCLESEENKKILKQQQGEILMNKMQNRDILDENEKKLITNDEGTYEKYLETNNEMHLSIERGRRKKMKEMFDDLSDLLPQLPSKVDKATIVNEAVNHIKNLQETLQKLERKKQERAQHSLKQIMGTTSGAVSVSGKQKVTFDKTWAASNMVLNIRGNEAQFSICSVHKPGIMTNIASVLEKHNIELISASISANGNGNTCMIQVHGKQASDANSMEETYRKVAEEIMPLIA* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02490 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 117 IPR011598 GO:0046983
Lapu3g02490 247 ProSiteProfiles ACT domain profile. 176 247 IPR002912 -
Lapu3g02490 247 Gene3D - 174 246 - -
Lapu3g02490 247 Gene3D - 58 134 IPR036638 GO:0046983
Lapu3g02490 247 SMART finulus 73 123 IPR011598 GO:0046983
Lapu3g02490 247 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 20 245 IPR044278 GO:0003700|GO:0006355|GO:0009960
Lapu3g02490 247 CDD bHLH_AtbHLH_like 72 125 IPR045239 -
Lapu3g02490 247 MobiDBLite consensus disorder prediction 1 21 - -
Lapu3g02490 247 Pfam Helix-loop-helix DNA-binding domain 71 118 IPR011598 GO:0046983
Lapu3g02490 247 Coils Coil 107 137 - -
Lapu3g02490 247 CDD ACT 177 220 - -
Lapu3g02490 247 MobiDBLite consensus disorder prediction 1 23 - -
Lapu3g02490 247 SUPERFAMILY ACT-like 175 241 IPR045865 -
Lapu3g02490 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 134 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02490 Lapu-Chr3 46869258 46875032 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02490 68 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 34.975 1.50e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g02490 HLH 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02490 - - pvu:PHAVU_003G048100g 356.681