Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02485 ATGGCTACCCCTAGTAAATCAACACCTATAACATCTTCTGACACTTTTGAGCAGAAGGGGAAGGCTATGACTGAGTCAAATGCAACCATTCTTCAATGTCCTTTAAACCAGCAACTCCATAGCTCCTTAGATGGCCCAGTAGCAATCCTTTGGGATATTGAGAATTGTCCTGTTCCAAGTGATGTACGCCCTGAAGATGTAGCAGGTAATATAAGAATGGCTTTACGGGTGCACCCAGTAATTAAAGGAGCTGTTATGCTGTTTTCTGCTTATGGGGATTTCAATTCTTTCCCTAGGCGACTTAGAGAGGGCTGTCAGAGAACTGGTGTTAAACTTATTGATGTTCCAAATGGGAGAAAAGATGCTGCCGATAAAGCTATCTTGGTCGACATGTTCTTATTTGCTCTTGACAACCCTCCACCATCCTCTATTATGCTTATATCTGGAGATGTTGATTTTGCACCAGCACTTCACATTCTTGGTCAGCGAGGATATACTGTTATTCTTGTCATCCCTGCTGGGGTGGGTGTTTCGTCTGCCCTATGCAATGCCGGTAAATTTGTCTGGGACTGGCCTAGTGTAGCACGGGGGGAAGGCTTTGTGCCCCCCTCAAAGGCTTTAGTGCCAACCCGGGGAGGTTCAATTGAGCTTGCTGGATATTTGATGGGGTGCCATATCAATGACAATTCTGAAGGACTAAATGAAGAAGAAGCAATAGTTTATAGAGGTGTGTCACAGAGCTATTATAACTCAAGGGAATTTTCATTGGTGTCACAATCACTGTCTGAATACAACTGTGGCACATCGAACATGACTTGCTTGCCAACAACCATGAGATCACACAGCCTTCCATCTGTATTCAATGATGCTCAAGGAGGGTCTATGATGCCTTCTGGTGAACATAATGAATGCCAGTTATGGGTACAACCTGGGGATTTAAATGGTCTAAAGGGGCAGCTGGTAAGGTTGCTTGAACTTTTTGGAGGATGCCTGCCTCTGGCCCGAGTTCCGGCAGAGTACCAGAAAATTTATGGAAGACCTCTTTATGTAGCTGAATATGGGGCAATGAAGTTGGTCTATCTTTTCAAGAAGATGGGTGATACCATTGCTGTGGAAGGGAAAGGAAATCGTAAATTTGTGTATCTCAGAAACTGGAAGGCAGGCCCAAGTGCTCCTCCTCTCTCTCTGGCAAAGAAAGATAAGAAGGGAAAGGGAGCCCAGGAAGAGAATGTGAATGTCGTCACTGGTGGATGCTCTTCAGATGAGTGCTCAGATGAAGAAAGAGTAGTCATAGAAGAACATGATGAAAGAAGTTGCACTGGCAAGGGCAATCAGGTAAGTGCAGCCAAATGTGAAGTTGATGACTGTGTTATTGAGCACTTCAAGTATGAGCTGCAAGAGATTCTAGTAAGCTATTCTTGTCGAATATTCCTTGGTTGCTTTGAGGCTATATACCAGCAGCGATACAAGAAACAACTGGAATATCAGAGATTTGGTGTTGACAAGTTGGAAGATCTGTTTGAGAAAGTGAGTGATGTGGTGGTATTGCACGAGGAACCAGTAAGCAAGAGGAAGTTCCTCGCTGCTGTGGGTGGTTAG 1599 0.444 MATPSKSTPITSSDTFEQKGKAMTESNATILQCPLNQQLHSSLDGPVAILWDIENCPVPSDVRPEDVAGNIRMALRVHPVIKGAVMLFSAYGDFNSFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPAGVGVSSALCNAGKFVWDWPSVARGEGFVPPSKALVPTRGGSIELAGYLMGCHINDNSEGLNEEEAIVYRGVSQSYYNSREFSLVSQSLSEYNCGTSNMTCLPTTMRSHSLPSVFNDAQGGSMMPSGEHNECQLWVQPGDLNGLKGQLVRLLELFGGCLPLARVPAEYQKIYGRPLYVAEYGAMKLVYLFKKMGDTIAVEGKGNRKFVYLRNWKAGPSAPPLSLAKKDKKGKGAQEENVNVVTGGCSSDECSDEERVVIEEHDERSCTGKGNQVSAAKCEVDDCVIEHFKYELQEILVSYSCRIFLGCFEAIYQQRYKKQLEYQRFGVDKLEDLFEKVSDVVVLHEEPVSKRKFLAAVGG* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02485 532 CDD PIN_limkain_b1_N_like 46 172 - -
Lapu3g02485 532 CDD LOTUS 458 520 - -
Lapu3g02485 532 CDD LOTUS 313 382 - -
Lapu3g02485 532 ProSiteProfiles OST-type HTH domain profile. 457 531 IPR025605 -
Lapu3g02485 532 ProSiteProfiles OST-type HTH domain profile. 312 384 IPR025605 -
Lapu3g02485 532 Pfam NYN domain 46 186 IPR021139 GO:0004540
Lapu3g02485 532 Gene3D - 455 524 IPR041966 -
Lapu3g02485 532 Gene3D - 312 381 IPR041966 -
Lapu3g02485 532 PANTHER LIMKAIN B LKAP 23 495 IPR024768 GO:0005777|GO:0010468
Lapu3g02485 532 MobiDBLite consensus disorder prediction 1 23 - -
Lapu3g02485 532 Gene3D - 43 192 - -
Lapu3g02485 532 Pfam OST-HTH/LOTUS domain 458 520 IPR025605 -
Lapu3g02485 532 Pfam OST-HTH/LOTUS domain 315 380 IPR025605 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02485 43 197 C2H2 Transcription Factor Family AT5G61190 41.935 2.86e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02485 - - gmx:100818186 989.564