Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02473 TCTTCCTCCTCCTCCTCCTTCTCCCCCGCCACTCTCACCACCGAGCAAGAACTCTCCGTCATCGTCGCCGCCCTCACCAACGTTGTCTCCGGCTCCACCTCCTCCGACGCCGTCTCCCTCCCGGACTTCCGCCTCCCCCACACCTCCCAGCCTCTCGCCGCAAACGCCTTCGACCGGATGGTCCCGCCGCCCACTATGGACACGTGTCGCGAGTGCAACATAGCAGGCTGCTTGGGCTGCAATTTCTTCCCCGAGGAGAAAAAGAAACAGAAGAGGGCCAAGAAGAAATACAGAGGCGTCAGGCAGAGGCCATGGGGCAAGTGGGCGGCCGAGATTCGTGACCCTCGCCGTGCGGCCCGGGTCTGGCTCGGGACTTTCAACACGGCCGAGGAGGCCGCCCGGGCCTACGACAAGGCCGCCATCGAGTTCCGCGGCCCACGGGCCAAGCTCAATTTTCCCTTAGTGGACGAGTCCTTAAGCATGCAGCAGAGCGAGCCAGAGAGGACTGCAGCGGAAGAGCAAATAAAGAACGAGAATCTGAACCAGGGCATGGAAATGAACTCGGTGGAATTCGGTAACAAGGATACCGAATTCTGGGACAGGATTGACGAAGCTGATTTTCATCAGCTGATGATGATGATGGATTTCGCTGGAGATTCTTCCGACTCTGCCACGGGGAACACTCTCAGTTCCTGA 696 0.5934 SSSSSSFSPATLTTEQELSVIVAALTNVVSGSTSSDAVSLPDFRLPHTSQPLAANAFDRMVPPPTMDTCRECNIAGCLGCNFFPEEKKKQKRAKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFNTAEEAARAYDKAAIEFRGPRAKLNFPLVDESLSMQQSEPERTAAEEQIKNENLNQGMEMNSVEFGNKDTEFWDRIDEADFHQLMMMMDFAGDSSDSATGNTLSS* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02473 231 ProSiteProfiles AP2/ERF domain profile. 96 153 IPR001471 GO:0003700|GO:0006355
Lapu3g02473 231 CDD AP2 97 153 IPR001471 GO:0003700|GO:0006355
Lapu3g02473 231 SUPERFAMILY DNA-binding domain 96 154 IPR016177 GO:0003677
Lapu3g02473 231 Pfam AP2 domain 96 145 IPR001471 GO:0003700|GO:0006355
Lapu3g02473 231 PANTHER DNA-BINDING DOMAIN 64 174 IPR044808 GO:0003700|GO:0009873
Lapu3g02473 231 FunFam Ethylene-responsive transcription factor 2 95 154 - -
Lapu3g02473 231 PRINTS Ethylene responsive element binding protein signature 119 135 IPR001471 GO:0003700|GO:0006355
Lapu3g02473 231 PRINTS Ethylene responsive element binding protein signature 97 108 IPR001471 GO:0003700|GO:0006355
Lapu3g02473 231 Gene3D AP2/ERF domain 95 155 IPR036955 GO:0003700|GO:0006355
Lapu3g02473 231 Coils Coil 227 231 - -
Lapu3g02473 231 SMART rav1_2 96 159 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02473 Lapu-Chr3 46674375 46675070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02473 12 161 AP2-EREBP Transcription Factor Family AT4G34410 48.387 4.87e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu3g02473 AP2 6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02473 - - gmx:100820426 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02473 3 46674375 46675070 Lapu3g02473 3 46674375 46675070 ECH