Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02456 ATGGCTCAACCCACCAGCAACGGCGATCTGAGTCAGCAGCAGGGGCAGCAGCAGCAACAGCAGTGGGCGCAGCCGCATCAGTACCAGCACCAATGGATGGCCATGCAGTACCCCGCCACCGCCATGGCCATGATGCAGCAGCAGATGATGATGTACCCGCAGCATTACATGCCCTATGTCCACCCTCATTACCCCCCGCCGCCGCCCCCTCCCTCCCACCACCACCACCACAAACAGCCCGCCGCTTCCCCCGCCGCCTCCTCCGACGAGATCAGGACCATCTGGCTCGGCGACCTCCACCATTGGATGGACGAGAACTACCTCCACAACTGCTTTGCTCACACCGGCGAGGTTGTGTCGGCCAAGGTCATTCGGAATAAGCAAACTGGCCAGTCTGAGGGATATGGATTTGTAGAGTTCTATTCACGTGCGACGGCTGAGAAAGTCTTGCAGAACTATAATGGCACCATGATGCCAAACACAGATCAGGCATTTCGTCTGAATTGGGCCACATTCAGTGCCGGGGATAGGAGATCTTCTGATGCTACTTCTGATCTCTCAATATTTGTGGGAGACTTGGCCATTGATGTTACTGATGCTATGCTGCAAGAGACTTTTGCTAGCAGATTTTCGTCTATTAAGGGAGCAAAAGTTGTCATTGATTCTAATACTGGCCGTTCAAAAGGTTATGGTTTTGTTAGGTTTGGCGATGAGAATGAGAGAACGAGGGCAATGACTGAAATGAATGGCGTCTATTGTTCTAGTAGGCCCATGAGAATAGGTGTTGCAACTCCCAAGAAAACATATGGCTATCAACAACAATATTCTTCTCAAGCTGTGGTATTGGCTGGTGGGCACTCAGCTAATGGTGCTGTGGCCCAAGGTTCCCAATCTGAAGGAGATTCAAACAACACTACTATATTTGTTGGAGGGCTTGATTCTGATATCAGTGATGAGGATCTTAGACAACCATTTTTGCAATTTGGTGAGGTTGTCTCTGTGAAAATTCCAGTGGGGAAAGGGTGTGGATTTGTTCAATTTGCTGACAGAAAGAATGCTGAGGAAGCAATTCAGGCTTTGAATGGGACAGTAATTGGGAAACAGACAGTGCGCCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGAAGTGATTCCAATGGAGGTCATTATGGTGGTCAGGGTTATGGAGGCCATGGATTTGCTGTGAGACAGAATCAGGATCTAGCCATGCAACCTGCTGCTACTGCAATTCAAGGGGCTTCCTGA 1272 0.4984 MAQPTSNGDLSQQQGQQQQQQWAQPHQYQHQWMAMQYPATAMAMMQQQMMMYPQHYMPYVHPHYPPPPPPPSHHHHHKQPAASPAASSDEIRTIWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNYNGTMMPNTDQAFRLNWATFSAGDRRSSDATSDLSIFVGDLAIDVTDAMLQETFASRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGYQQQYSSQAVVLAGGHSANGAVAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQFGEVVSVKIPVGKGCGFVQFADRKNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHWRSDSNGGHYGGQGYGGHGFAVRQNQDLAMQPAATAIQGAS* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02456 423 FunFam Polyadenylate-binding protein RBP47B 173 276 - -
Lapu3g02456 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 161 IPR000504 GO:0003723
Lapu3g02456 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 370 IPR000504 GO:0003723
Lapu3g02456 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 257 IPR000504 GO:0003723
Lapu3g02456 423 FunFam Polyadenylate-binding protein RBP47B 91 171 - -
Lapu3g02456 423 MobiDBLite consensus disorder prediction 63 88 - -
Lapu3g02456 423 Gene3D - 172 276 IPR012677 -
Lapu3g02456 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 377 IPR000504 GO:0003723
Lapu3g02456 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 172 IPR000504 GO:0003723
Lapu3g02456 423 SMART rrm1_1 93 168 IPR000504 GO:0003723
Lapu3g02456 423 SMART rrm1_1 306 373 IPR000504 GO:0003723
Lapu3g02456 423 SMART rrm1_1 187 261 IPR000504 GO:0003723
Lapu3g02456 423 Gene3D - 286 409 IPR012677 -
Lapu3g02456 423 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 81 381 - -
Lapu3g02456 423 SUPERFAMILY RNA-binding domain, RBD 59 174 IPR035979 GO:0003676
Lapu3g02456 423 CDD RRM1_SECp43_like 93 173 - -
Lapu3g02456 423 FunFam Polyadenylate-binding protein RBP47 287 403 - -
Lapu3g02456 423 SUPERFAMILY RNA-binding domain, RBD 296 401 IPR035979 GO:0003676
Lapu3g02456 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 265 IPR000504 GO:0003723
Lapu3g02456 423 SUPERFAMILY RNA-binding domain, RBD 183 280 IPR035979 GO:0003676
Lapu3g02456 423 CDD RRM2_SECp43_like 185 264 - -
Lapu3g02456 423 Gene3D - 91 171 IPR012677 -
Lapu3g02456 423 CDD RRM3_NGR1_NAM8_like 304 375 - -
Lapu3g02456 423 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02456 Lapu-Chr3 46473777 46479926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02456 70 384 Eukaryotic Initiation Factors Gene Family AT4G34110 29.503 5.76e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02456 - - gmx:100814564 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02456 3 46473777 46479926 Lapu3g02456 3 46473777 46479926 ECH