LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu3g02454	ATGGGAGTTTGCACATCCAAGCCGCACAAGCCGAACCCTTACGCGCTTCGCGAAGCCGAAGCCGAAGCTGACCCTTCGCAAATCCCGAAAGCCCCACTTAGTCCCGCCGCCGCCGAGAACCACCGCCGGAAAGATGACGTCACCTCCGGGAAACAGTCTCCGTTTTTTCCTTTCTACAGCCCGAGCCCCGCGCGCTTCTTGAAAAAGTCTCCGGCGCCGGCGGGAGGGAGCAGGAGCGCGACCTCCACGCCGAGGAGGTTTTTCCGAAGGCCGTTTCCTCCTCCGTCGCCGGCGAAGCATATAAGGGCTGTGCTGGCGCGGCGACAGGGGAAGAAGGCGGCGGCAGCAATATCGGAGGAGGGGGAAGATGGCGGTGGAGGTGCGGCGGATTTGGATAAGAGGTTTGGGTTCTCTAAGGAGTTCACTAGTAGGTTGGAAGTTGGTGAAGAAGTGGGTCGAGGGCATTTTGGGTACACTTGTTCTGCTAGGTTCAAGAAGGGCGAGCTTAAGGGTCAACAAGTGGCTGTTAAGGTCATACCAAAAGCAAAGATGACAACAGCAATTGCTATTGAAGATGTGAGAAGGGAGGTGAAAATATTGCGAGCTTTGAATGGACACAGCAATTTGATACAGTTCTATGATGCATTTGAAGACCAAGATAATGTCTACATTGTAATGGAGTTGTGTGAAGGGGGGGAGCTCTTAGATATGATATTATCAAGAGGAGGGAAATACTCAGAAGATGATGCGAAGGCTGTCATGGTGCAGATACTAAATGTTGTTGCATTTTGTCATCTTCAGGGTGTTGTGCACCGAGATCTTAAGCCAGAGAATTTTTTGTACACTAAGAAGGATGAAAGTTCCGAGTTGAAAGCCATAGACTTTGGGTTATCAGATTTTGTCAGACCAGATGAAAGGCTTAATGATATTGTTGGAAGTGCATACTATGTGGCCCCTGAAGTTCTCCATAGATCTTATAGCACAGAGGCTGATGTGTGGAGTATAGGCGTGATAGCATACATTCTTTTATGTGGTAGTCGACCATTTTGGGCTCGAACAGAGTCTGGTATTTTTAGGGCAGTTCTGAAAGCTGATCCTAGCTTTGATGAAACACCGTGGCCATCTTTATCTTCAGAAGCAAAGGATTTTGTCAAACGCTTATTGAATAAGGACCCACGGAAGCGAATATCTGCTGCTCAGGCTCTAAGTCATCCTTGGATACGGAATTACAGTAATGTAAAAGTTCCACTTGATATTTTAATATTTAAGCTCATGAAGACATATATGAGATCATCATCCTTACGCAAGGCTGCCTTAAGGGCCTTGTCAAAAACATTGACTGCAGATGAACTCTATTATTTGAGGGAGCAATTTTCACTGCTAGAACCAAGCAAAAATGGCAGCATATCTTTAGAAAATGTTAACAAGGCCTTGATGAAATATGCAACAGATGCCATGAAAGAGTCTCGAATCCCCGACTTTCTTTCCTCGCTGAATTCATTACAATATAGAAGGATGGATTTTGAAGAATTCTGCGCAGCTGCTTTAAGTGTGCATCAACTTGAAGCTCTTGATCGTTGGGAACAACATGCTCGCTGTGCCTATGAACTCTTTGATAAAGATGGAAACAGGGCTATTGTCATTGAAGAGCTTGCTTCAGAACTTGGACTTGGTCCCTCTATCCCTGTTCATGTTGTTCTTCATGACTGGATACGCCACACTGATGGAAAATTAAGCTTTCTTGGGTTTGTCAAATTATTACACGGTGTATCTAGCCGAAGCCTTGCGAAGGTTCAATAA	1800	0.46	MGVCTSKPHKPNPYALREAEAEADPSQIPKAPLSPAAAENHRRKDDVTSGKQSPFFPFYSPSPARFLKKSPAPAGGSRSATSTPRRFFRRPFPPPSPAKHIRAVLARRQGKKAAAAISEEGEDGGGGAADLDKRFGFSKEFTSRLEVGEEVGRGHFGYTCSARFKKGELKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALNGHSNLIQFYDAFEDQDNVYIVMELCEGGELLDMILSRGGKYSEDDAKAVMVQILNVVAFCHLQGVVHRDLKPENFLYTKKDESSELKAIDFGLSDFVRPDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDETPWPSLSSEAKDFVKRLLNKDPRKRISAAQALSHPWIRNYSNVKVPLDILIFKLMKTYMRSSSLRKAALRALSKTLTADELYYLREQFSLLEPSKNGSISLENVNKALMKYATDAMKESRIPDFLSSLNSLQYRRMDFEEFCAAALSVHQLEALDRWEQHARCAYELFDKDGNRAIVIEELASELGLGPSIPVHVVLHDWIRHTDGKLSFLGFVKLLHGVSSRSLAKVQ*	600

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu3g02454	599	ProSiteProfiles	Protein kinase domain profile.	145	407	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu3g02454	599	PANTHER	SERINE/THREONINE-PROTEIN KINASE	131	574	-	-
	Lapu3g02454	599	SUPERFAMILY	Protein kinase-like (PK-like)	141	448	IPR011009	-
	Lapu3g02454	599	SMART	serkin_6	145	407	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu3g02454	599	SUPERFAMILY	EF-hand	435	589	IPR011992	-
	Lapu3g02454	599	CDD	STKc_CAMK	146	406	-	-
	Lapu3g02454	599	Gene3D	-	425	516	-	-
	Lapu3g02454	599	Gene3D	Transferase(Phosphotransferase) domain 1	234	419	-	-
	Lapu3g02454	599	FunFam	CDPK-related kinase 1	138	233	-	-
	Lapu3g02454	599	Pfam	Protein kinase domain	146	407	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu3g02454	599	ProSitePatterns	Protein kinases ATP-binding region signature.	151	177	IPR017441	GO:0005524
	Lapu3g02454	599	FunFam	CDPK-related kinase 1	443	516	-	-
	Lapu3g02454	599	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	269	281	IPR008271	GO:0004672\|GO:0006468
	Lapu3g02454	599	Gene3D	-	432	586	-	-
	Lapu3g02454	599	FunFam	CDPK-related kinase 3	137	309	-	-
	Lapu3g02454	599	FunFam	Calcium-dependent protein kinase SK5	317	413	-	-
	Lapu3g02454	599	Gene3D	Phosphorylase Kinase; domain 1	147	233	-	-
	Lapu3g02454	599	MobiDBLite	consensus disorder prediction	1	95	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu3g02454	Lapu-Chr3	46437859	46445333	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu3g02454	1	595	EF-hand Containing Proteins	AT3G50530	71.969	0.0	932

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Lapu3g02454		Pkinase	3.9e-72	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu3g02454	-		-	gmx:100798913	1089.72