Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02449 ATGGGTTCGGTTCCGGCAGAACTGAGCTTGGATTTAAGACCCTCTTTTGTCCCCAAAACCATCACCGATTTCCTCCGCCACCTCTCCTCCGCCCCCGACAAGCTCGCCAATCTTCACGATTTCCTCGCTCGCTTGGAAGACGAGCTCCGCAAGATCCACGCCTTCAAGCGCGAGCTTCCTCTCTCCATGCTCCTCTTAAACGACGCAATTTCACTTCTCAAGGCGGAATCGCAGAAATGCTGGCCGCGTGATTCTCCCCCTGTGTTGGAGGAGTTCATTCCCTTGAAGAAAGAGCGTGATCAGAACGACGGAAATAACCATGATGATGATAATGACAAGGATAATGAATGCAGGGATAAGCGGAATTGGTTGAGCTCTGTTCAGCTTTGGAATAACACTACCACTAATAACAATGCATCTGATCGGAAACAACAACAACAACAACAACATAAATTAGAAACCAAGAAAATTGAAGAAGGGCAATCTGTTGGTGAGGATCCTTTTCAGTCGTGTAGCAATAGAAATGGAGGAAGAAGGGCGTTTATGCCTTTCTCTAGGTACTCTTCTTGTTCATCTTCTGTGCCGGTGGCAACAGTGGGCCTGGCTGCTGCAACCAAAGAAGAGAAGGAAGAAAGTGTTATGAATAGGCTTTCTCTTCAGACCCCTTCTTCTATGAAAGACGGGTGTGGTTCAAGGGGATCCAGAAGCAGCTCCAACAGGGCTGTTTCTTCTTCTTCTCCTCCTACGGTTCACCCCAGTTTGAGGGCATCATCGCTTCAGCAGACTGCTAGGAAACAGAGGAGATGCTGGTCCCCTGAGTTGCACAGACGATTTGTTAATGCTTTGCAGAAACTGGGAGGTTCTCAAGCGGCAACACCAAAGCAAATTAGAGAGTTAATGCAGGTTGATGGCCTGACTAACGATGAAGTGAAAAGCCACTTACAAAAATACAGACTTCATACGCGGAGAGTTCCAGCTGCAAGTGGTAATCAGCCAGTTGTGGTTCTTGGAGGTTTGTGGATGTCTCAAGATCAGTACAATGACTCCTCAAAAGTTAGCAGTTCAGGGTCAGGTTCTCCTCAAAGTCCCCTTCATTTGACTGCAGGGTCTCGAGGAGGAACATCTCCAACTGAAGGTGACAGCATGGAAGACGATGAAGATGCAAGATCCGAGAGTTATAGTTGGAAAAGTCATATGCACAAACCTGGAAAAGTTGATGTATAG 1224 0.4722 MGSVPAELSLDLRPSFVPKTITDFLRHLSSAPDKLANLHDFLARLEDELRKIHAFKRELPLSMLLLNDAISLLKAESQKCWPRDSPPVLEEFIPLKKERDQNDGNNHDDDNDKDNECRDKRNWLSSVQLWNNTTTNNNASDRKQQQQQQHKLETKKIEEGQSVGEDPFQSCSNRNGGRRAFMPFSRYSSCSSSVPVATVGLAAATKEEKEESVMNRLSLQTPSSMKDGCGSRGSRSSSNRAVSSSSPPTVHPSLRASSLQQTARKQRRCWSPELHRRFVNALQKLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPAASGNQPVVVLGGLWMSQDQYNDSSKVSSSGSGSPQSPLHLTAGSRGGTSPTEGDSMEDDEDARSESYSWKSHMHKPGKVDV* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02449 407 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 397 IPR044787 GO:0003700|GO:0006355
Lapu3g02449 407 Gene3D - 264 322 - -
Lapu3g02449 407 MobiDBLite consensus disorder prediction 146 162 - -
Lapu3g02449 407 MobiDBLite consensus disorder prediction 205 268 - -
Lapu3g02449 407 MobiDBLite consensus disorder prediction 388 407 - -
Lapu3g02449 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 262 322 IPR017930 -
Lapu3g02449 407 MobiDBLite consensus disorder prediction 215 267 - -
Lapu3g02449 407 MobiDBLite consensus disorder prediction 346 407 - -
Lapu3g02449 407 FunFam Myb family transcription factor 264 322 - -
Lapu3g02449 407 SUPERFAMILY Homeodomain-like 262 323 IPR009057 -
Lapu3g02449 407 Pfam Myb-like DNA-binding domain 267 318 IPR001005 -
Lapu3g02449 407 NCBIfam myb-like DNA-binding domain, SHAQKYF class 265 320 IPR006447 GO:0003677
Lapu3g02449 407 MobiDBLite consensus disorder prediction 95 118 - -
Lapu3g02449 407 MobiDBLite consensus disorder prediction 132 176 - -
Lapu3g02449 407 MobiDBLite consensus disorder prediction 346 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02449 Lapu-Chr3 46339566 46342979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02449 6 341 G2-like Transcription Factor Family AT2G03500 39.773 2.21e-55 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lapu3g02449 Myb_DNA-binding 3.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02449 - - gmx:100806237 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02449 3 46339566 46342979 Lapu3g02449 3 46339566 46342979 ECH
Lapu2g00590 2 5147184 5149871 Lapu3g02449 3 46339566 46342979 PCT