Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02436 TTTCTTTTCTTTCTCCTTTTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCAAAAACGATGAACGACTTCATTGTATGCATTGATCGGATTATAGCCTCCACGGCCTGTTTTGGATCAGTCGATACAAGAAACTGTGATGGTGGAGTTGACCCTATGATACCGGTCTGTGACAATGATGGAGAAGGGTGCTCCGCTTCTTCAAACAAGTATGATGATGATGACGATGTTGATGTTGTTGAGTGCAGAATATGCCAGGAAGAAGATGAAGTCCAGACCATGGAGTCACCTTGTTCTTGTAATGGCACTCTCAAGTTTGCTCATAGGAATTGTATCCAGAGATGGTGCAATAAGAAAGGAAATACAATATGTGAAATCTGTAATCAGGAATTTTCACCAAATTATTCTCTTCCACCAGTGAGAAGCAATGCAATTATGGCAATTGATATAAGGCAAGAATGGGGGCATAATGCTGATCTGCATGTGGCTCTAGCTTCAGCTGAGCACCAGTTGCTGCAAACTGAGTATGAAGATTACGCCATGTCACAAACCAGTAGCATTGCTTGCCTGCGATCTGCCACTCTCTTGTTGCTGATAATTTTACTTGTACGCCAAGCTTTAATGGTTGCAAAGAACTCCACAACTGGACAAGATGTGTCAATAATCTTTAATGTA 672 0.4167 FLFFLLFSSLSLSLSLSKTMNDFIVCIDRIIASTACFGSVDTRNCDGGVDPMIPVCDNDGEGCSASSNKYDDDDDVDVVECRICQEEDEVQTMESPCSCNGTLKFAHRNCIQRWCNKKGNTICEICNQEFSPNYSLPPVRSNAIMAIDIRQEWGHNADLHVALASAEHQLLQTEYEDYAMSQTSSIACLRSATLLLLIILLVRQALMVAKNSTTGQDVSIIFNV 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02436 224 SUPERFAMILY RING/U-box 75 131 - -
Lapu3g02436 224 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 21 223 IPR033275 -
Lapu3g02436 224 Pfam RING-variant domain 81 126 IPR011016 GO:0008270
Lapu3g02436 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 132 IPR013083 -
Lapu3g02436 224 ProSiteProfiles Zinc finger RING-CH-type profile. 73 133 IPR011016 GO:0008270
Lapu3g02436 224 CDD RING_CH-C4HC3_MARCH 81 127 - -
Lapu3g02436 224 SMART ringv_2 80 127 IPR011016 GO:0008270
Lapu3g02436 224 Pfam Protein of unknown function (DUF3675) 132 223 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02436 Lapu-Chr3 46134276 46138636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02436 24 156 C3H Transcription Factor Family AT5G05830 24.000 1.72e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02436 - - gmx:100812120 333.183