LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu3g02435	ATGATAGCCAGCTCCTTCTGCAATGCTGATTCTATGTTTTCAAGAGAAGAGGGGATAGATGTTAGAAAGATGATGGAACATAAAAGGAGTCCCTGCTCTGTTGATCAAAGCAGTTATACTTCTATTGCATCTAAAAGGCAAAAGGCTGATTTATCTATCAGCACTAAGGAGAGGAAGGAGAAGATTGGTGAACGAATTGTTGCTCTTCAGCAGCTTGTTTCACCATATGGAAAGACCGATACATCTTCTGTTTTAAAGGAGGCAATGGAATACATAGGATTCCTTCATAAACAAGTTAAGCTGCTCAGTGCTCCATACCTTGAAACTTCAGCAGCACCCAAGATGCAGGGTATGGAGACATGCAGCCTGAGGAGTAGAGGGTTATGCCTTGTTCCTGTGTCATTCACAATTGGAGTTGCTGAGAGCAATGGTGCAGATATCTGGGCTCCCATCAAAACTGCTACTTCACCTAAATTGGAGAAGGATGTCTCACAATTTCATTGA	504	0.4226	MIASSFCNADSMFSREEGIDVRKMMEHKRSPCSVDQSSYTSIASKRQKADLSISTKERKEKIGERIVALQQLVSPYGKTDTSSVLKEAMEYIGFLHKQVKLLSAPYLETSAAPKMQGMETCSLRSRGLCLVPVSFTIGVAESNGADIWAPIKTATSPKLEKDVSQFH*	168

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu3g02435	167	FunFam	Transcription factor bHLH113 family	45	121	-	-
	Lapu3g02435	167	SMART	finulus	52	101	IPR011598	GO:0046983
	Lapu3g02435	167	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	46	95	IPR011598	GO:0046983
	Lapu3g02435	167	PANTHER	TRANSCRIPTION FACTOR BHLH83-RELATED	36	136	-	-
	Lapu3g02435	167	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	48	112	IPR036638	GO:0046983
	Lapu3g02435	167	Gene3D	-	43	115	IPR036638	GO:0046983
	Lapu3g02435	167	CDD	bHLH_AtbHLH_like	52	103	IPR045239	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu3g02435	Lapu-Chr3	46117166	46121970	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu3g02435	24	159	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT1G05710	54.430	6.14e-53	164

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu3g02435	-		-	gmx:100809747	314.309

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lapu3g02435	3	46117166	46121970	Lapu3g02435	3	46117166	46121970	ECH