Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02428 ATGGGAAAGAAGGGGAGTTGGTTTTCTGCAATCAAGAGGGTTTTCACTCACCACTCCAAGGGGAAGCCGGATGCGGATAACAAAGGCACAAAAGAAAAGAAGAAAAGTCTAGGAAAACTAAAGCATGGAGAGACCAATTCATTCATCCCCCTCTTCAGAGAGCCAAGTAGCATTGAGAAAATCTTTGGGGACTTTGAAAGGGAGCAACAACTACTGGGGTTAAGGCCTGCCACTCCTCCTGAGAGACCCAAAAGTCCACCTTATGTCCCTCCAAGAGCTCCTTCTCCTAGGCCTCCTTCTCCAAGGGCTCCTTCTCCAAGACCTCCATCTCCAAGACCTCCATCTCCAAGGGCTGCTTCTCCCAGGGCTTCTTCTCCACGAGTTACCTCTCCCAAAGCTACGTCTTCCCGGATTACTCATCACCACAAGGAGGTTGGCTACAGACCAGAACCAACTTTGAGGCACCAGAATGCCTCAGCTACTAAGATCCAGGCTGTTTACAGAGGCTACATGGCCAGGAGGAGTTTTAGAGCACTAAAGGGTCTGGTGAGGCTCCAAGGAGTAATAAGAGGACAGAATGTGAAGAGGCAGACAGTTAATGCCATGAAACACATGCAACTGTTAGTGCGAGTTCAATCTCAGATTCAGTCTCGAAGGATCCAGATGTTGGAAAACCAGGCACGATATCAAGCTGAGTTCAAGAATGATAAAGAAGCAGCCAGTATCTTGGGCAAACTCACTTCTGAAGCAGGTAACGAAGAGTGGGATGATAGCTTACTGACCAAAGAAGAAGTAGAGGCAAGGTTACAGAGGAAGGTGGAAGCAATCATCAAAAGAGAAAGAGCAATGGCATTTGCATATTCACATCAGCTATGGAAAGCCACTCCAAAATCAACTCACACCCCAGTGACCGATAGGCGATCAGGTGGATTCCCTTGGTGGTGGAACTGGTTGGAAAGACAAGCACCTGCAGCAGCAACTCCACAAGAAAGACAAGTGCTGAAGAGTTTTCAACTCACACCTCCAAGACCATACTCAGAGCAAAAGACTAGCCCAAGACCCGGATCCAGCACACAAAGACAACAGCAGCCTCATTTTGCCTTTGATAACATGGACACTCCCACACCAAAGTCCACAAAATCAACCATAGTGACGTCTTCAAAACCGGTGCGAACACCTCCATATAGAACTCCTCAGGCAAACAGTTCCGGCTCTGGCTCTAAATATCTGAGACCAAGGGGTGTGGGAGCCAACTCACCTTTTGATGTGCCACTGAAGGATGATGACAGTCTCACAAGCTGCCCACCATTTTCAGTGCCAAACTACATGGCTCCAACCCTCTCTGCCAAAGCCAAAGTACGTGCTAGTAGTAATCCTAGAGAAAGGCTTGGTGGGACTCCAACAAGTACTGATTCAAAGAGGAGACTTTCATTCCCTTTGTCACAAGGAATAGGTTCTTTCAAGTGGTCTAAAGGGTTCTCAAGCAAGGATCAAAGGGTGCAAGATAAATTTCAGCCGCTTGAATCTATAGGAAACGTGAGTGTGGATTCAACAGTGTCTTTGCCCGCAAGGGTGGGAAGAAAGCCTTTCACAAGATTTGTGTGA 1605 0.4754 MGKKGSWFSAIKRVFTHHSKGKPDADNKGTKEKKKSLGKLKHGETNSFIPLFREPSSIEKIFGDFEREQQLLGLRPATPPERPKSPPYVPPRAPSPRPPSPRAPSPRPPSPRPPSPRAASPRASSPRVTSPKATSSRITHHHKEVGYRPEPTLRHQNASATKIQAVYRGYMARRSFRALKGLVRLQGVIRGQNVKRQTVNAMKHMQLLVRVQSQIQSRRIQMLENQARYQAEFKNDKEAASILGKLTSEAGNEEWDDSLLTKEEVEARLQRKVEAIIKRERAMAFAYSHQLWKATPKSTHTPVTDRRSGGFPWWWNWLERQAPAAATPQERQVLKSFQLTPPRPYSEQKTSPRPGSSTQRQQQPHFAFDNMDTPTPKSTKSTIVTSSKPVRTPPYRTPQANSSGSGSKYLRPRGVGANSPFDVPLKDDDSLTSCPPFSVPNYMAPTLSAKAKVRASSNPRERLGGTPTSTDSKRRLSFPLSQGIGSFKWSKGFSSKDQRVQDKFQPLESIGNVSVDSTVSLPARVGRKPFTRFV* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02428 534 MobiDBLite consensus disorder prediction 453 474 - -
Lapu3g02428 534 Pfam Protein of unknown function (DUF4005) 412 496 IPR025064 -
Lapu3g02428 534 PANTHER IQ-DOMAIN 5-RELATED 1 481 - -
Lapu3g02428 534 MobiDBLite consensus disorder prediction 14 150 - -
Lapu3g02428 534 MobiDBLite consensus disorder prediction 79 120 - -
Lapu3g02428 534 SMART iq_5 155 177 IPR000048 GO:0005515
Lapu3g02428 534 ProSiteProfiles IQ motif profile. 156 184 IPR000048 GO:0005515
Lapu3g02428 534 MobiDBLite consensus disorder prediction 337 422 - -
Lapu3g02428 534 Pfam IQ calmodulin-binding motif 158 177 IPR000048 GO:0005515
Lapu3g02428 534 Gene3D - 154 229 - -
Lapu3g02428 534 MobiDBLite consensus disorder prediction 17 41 - -
Lapu3g02428 534 MobiDBLite consensus disorder prediction 337 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02428 Lapu-Chr3 46031519 46037958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02428 1 533 IQD Protein Family AT3G59690 52.220 3.74e-167 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02428 - - gmx:100807777 853.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02428 3 46031519 46037958 Lapu3g02428 3 46031519 46037958 ECH