Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02413 ATGGTTTACTCCTTCTATGACAAAAGCTCTTCTTCTGGCTCTGATATTTCGGGGTTGTTAAATCCCACTTCGCGAAGCCTTGGAGCTTCCGATAGTGTCGTTGTGAACGGTGGCTTGCCATCGTCACATTCTTTGGTTTATGAGAGTGAGAAGGGAGAGCTGGTGAAGTGCTCTTCTGCTGCAAGGGTAGGGAAGAATGAGATTTGTGAGGCCAAAGCTTTGGCTGCTTTGAAGAATCATAGCGAAGCAGAGAGAAGGAGGAGGGAGAGAATAAACGGTCATCTTGCAACACTACGTGGCCTTGTACCATCCACTGAAAAGATGGATAAAGCCACTTTACTGGCTGAAGTGATCAGCCAAGTGAAGGAATTGAAGAAAACTGCAGTAGAAGCAAGCAAGGGTTTTCTAATCCCAATGGATGCTGATGAAGTGAAAGTTGAACCATGTGATGGATCCATGTCTTACAGAGCAACTATTTGCTGTGATTTCCGACCTGAAATAATATCTGACCTGAGACAAACCCTTGATTCCCTTCCACTGCATCTAGAGAAGGCAGAAATTTCAACTTTGGCTGGAAGAATGAAGAATGTATTCGTCTTTACATGTTGCAAAGGGAGCATTAATATTGATATGGAGGCATGCCAAGCTCTTGCAAGAACTGTTCACCAGGCACTGTGTTCTGTGCTGGATAAGGCTTCTGCTTCACTTGACTGGGAAGAGAAAGAAGTTGCAGCAAGGGAGATTGAAAGGTTGGCTAAAGAAGATGAGAAGATGAGAGAGTTGACAAGTGAGCTTGGGGTGGTCAGGGTGCTGGTTTCTATGGCGCTTTCCGACGTCCCTAGCCGCCGCCGAGTAGGACTCAAGGCATTGATCCAGCTATCCAATGGAAATCACAAGAACAAGGCTTTGATAGTTGAGGCAGGAATGTTGTGGAAACTGCCTAAGAAAATTGACCTTGAAGATGAATCAATAAGTGAATTTGCAGACTTGCTCTCTTCATTGTCAACTCTTGGAAACATCCAATTTCCTCATTCTTCAATTGACCTTCTCCAATTTCTCATACACATTCTGAAGTCATGCCCAAGTTTTGATACAAAACAGTCGTGTTTGGTAGCCATGTCCAACATCTCAGATGTGTTAGAGAATGCAAGGCCATTGATTTCTAATGGGGTTGTACCTATTCTCTTGGAACTGTCAGAGAAAGCGACTTCAGAGAAAGCGACTTCAGAGAAAGCACTTAGCATCCTTGGGAACTTGGGGATGACTTTAATGGGAAAGAAAGCATTGGAGAACAGCTCAATGGTGCCAAAATGCTTGATTGAGATCTTATCTTGGGAAGATAAACCCAAATGCCAAGAGTTGTCAGCTTATATTTTGATTATTCTTGCTCATAAAAACTCAACACAGAGAAATAAAATGGCACAGTCAGGGATTGTTCCTGTACTTCTTGAAGTAGCTTTATTAGGGAGTTCTTTAGCTCAGGAAAGAGCACTGAAATTATTGCAATGGTTTAGGGATGAACGGAAAATAAGGATGGGGCCACACTCAGGACCACAGTCTTCAAGAATTGCAAATGAATCACTTAAAAATCAGAGAGATACAAAAGAAGGGAAGAGAATGATGAAGAGATTAGTGAAAGAAAGTCTGCATAGGAATATGGAAATGATAACTAAAAGGGCTAATGCAGTTGAGGATTCTTCTAATGAGGATTCTTCTAATGGGCTCAAGTCTCTGGTTACCAGCACAAGATCCAAAAGTTTGCCAAATTAA 1770 0.4237 MVYSFYDKSSSSGSDISGLLNPTSRSLGASDSVVVNGGLPSSHSLVYESEKGELVKCSSAARVGKNEICEAKALAALKNHSEAERRRRERINGHLATLRGLVPSTEKMDKATLLAEVISQVKELKKTAVEASKGFLIPMDADEVKVEPCDGSMSYRATICCDFRPEIISDLRQTLDSLPLHLEKAEISTLAGRMKNVFVFTCCKGSINIDMEACQALARTVHQALCSVLDKASASLDWEEKEVAAREIERLAKEDEKMRELTSELGVVRVLVSMALSDVPSRRRVGLKALIQLSNGNHKNKALIVEAGMLWKLPKKIDLEDESISEFADLLSSLSTLGNIQFPHSSIDLLQFLIHILKSCPSFDTKQSCLVAMSNISDVLENARPLISNGVVPILLELSEKATSEKATSEKALSILGNLGMTLMGKKALENSSMVPKCLIEILSWEDKPKCQELSAYILIILAHKNSTQRNKMAQSGIVPVLLEVALLGSSLAQERALKLLQWFRDERKIRMGPHSGPQSSRIANESLKNQRDTKEGKRMMKRLVKESLHRNMEMITKRANAVEDSSNEDSSNGLKSLVTSTRSKSLPN* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02413 589 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 91 588 - -
Lapu3g02413 589 MobiDBLite consensus disorder prediction 511 539 - -
Lapu3g02413 589 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 79 127 IPR036638 GO:0046983
Lapu3g02413 589 Gene3D - 72 133 IPR036638 GO:0046983
Lapu3g02413 589 Coils Coil 241 264 - -
Lapu3g02413 589 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 124 IPR011598 GO:0046983
Lapu3g02413 589 SMART finulus 81 130 IPR011598 GO:0046983
Lapu3g02413 589 MobiDBLite consensus disorder prediction 556 589 - -
Lapu3g02413 589 Pfam Helix-loop-helix DNA-binding domain 79 124 IPR011598 GO:0046983
Lapu3g02413 589 Gene3D - 199 513 IPR011989 -
Lapu3g02413 589 MobiDBLite consensus disorder prediction 566 589 - -
Lapu3g02413 589 SUPERFAMILY ARM repeat 235 503 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02413 Lapu-Chr3 45793055 45807935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02413 72 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 40.588 6.65e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g02413 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02413 - - var:108327871 510.375