Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02412 ATGGACTTCTCAAAGAAGCGCAAGACTGAAGAGAACGGGGATGCTGATTCTCTGTCGTCACCACCCTCCCAAGCATTCCCCACCGCCACCGTCACCACAACCTCCCCCATCACCACAACCGCTCCCCTCTCCGCGGAAGACATCCGCAAGATCTTGCGTCCGTTTTCCCAGGAACAGCTCCTCGACCTCCTCCAATCAGCGTCGCTCCGCCACTCCGACGTCCTCGACGCCGTGCGCGCCGTCGCGGACCGCGACTCCACCCTCCGGAAGCTGTTCGTACGCGGACTTGCCGGCGAAACCACCAGCGAGACCCTGCGCAGCGTGTTCTCGGCGTTCGGCGAACTCGACGAGGCTATCGTGATCTTCGACAAGGCCACGGGACGCTCCAAGGGCTATGGCTTCGTAGTGTTCCGCCATGTGGACGGCGCCATCCTCGCTCTGAAGGACCCCAGCAAGAAGATCGACGGCCGCATGACGGTCACGCAACTTGCCGCAGCTGGTGGGCCCGGCGGCTCCGGCGACGTGTCGGCGAGGAAGGTTTTCGTTGGGAACGTGCCGTTCGAGATTTCCTCGGATAAACTACTGAGCGAGTTCCTCAAGTTCGGAGAAGTCGAGGAAGGGCCTCTAGGGTTTGACAAATCGAGCGGCAAATCGAGGGGTTTCGCTTTCTTCGTTTATAAGACGGAGGAAGGTGCGAGGGCTTCGTTGGTGCAACCTGTTAAGACCATTGATGGGCACCAAGTAATTTGCAAATTGGCTGTGGATAGCAAAAAGACGAAAACCTTTGGAGGGGATCCACATCAGCATCAACACACGCAGCAGCAGCAACAACATCCGCAGCAACAGATGCAACAACAAGGTCCTATGATGGTACCTCAGTATGGTGGATATGGTGGGAATGGCTATGGAATACAGCACCCGGTGCCACCGTATAACAATCCGGTTCAGGTTTCTGGTGGTGGTGGGTATGGTCATGGAATTGGCGGTGGGTATGGTAATTCGCAGATGGGTGGGCCGGTTTCCGGTGACTATGGTGCTAGACTGCCTCCCAATTCTGGTGGAGGGTTCCCTGAAGGCTCCCAGTATGGTTACCCTCCTTCTTCCACGCTTCCACCACAGCAACAAGTGCCTATGCCGAGACCTCCTCCTGGAGGAATGTACCAAGGCGTGCCACCCTATTATTGA 1185 0.5722 MDFSKKRKTEENGDADSLSSPPSQAFPTATVTTTSPITTTAPLSAEDIRKILRPFSQEQLLDLLQSASLRHSDVLDAVRAVADRDSTLRKLFVRGLAGETTSETLRSVFSAFGELDEAIVIFDKATGRSKGYGFVVFRHVDGAILALKDPSKKIDGRMTVTQLAAAGGPGGSGDVSARKVFVGNVPFEISSDKLLSEFLKFGEVEEGPLGFDKSSGKSRGFAFFVYKTEEGARASLVQPVKTIDGHQVICKLAVDSKKTKTFGGDPHQHQHTQQQQQHPQQQMQQQGPMMVPQYGGYGGNGYGIQHPVPPYNNPVQVSGGGGYGHGIGGGYGNSQMGGPVSGDYGARLPPNSGGGFPEGSQYGYPPSSTLPPQQQVPMPRPPPGGMYQGVPPYY* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02412 394 MobiDBLite consensus disorder prediction 1 37 - -
Lapu3g02412 394 SUPERFAMILY RNA-binding domain, RBD 175 265 IPR035979 GO:0003676
Lapu3g02412 394 Gene3D - 80 167 IPR012677 -
Lapu3g02412 394 MobiDBLite consensus disorder prediction 334 394 - -
Lapu3g02412 394 SUPERFAMILY RNA-binding domain, RBD 83 168 IPR035979 GO:0003676
Lapu3g02412 394 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
Lapu3g02412 394 FunFam UBP1-associated protein 2C isoform A 72 174 - -
Lapu3g02412 394 SMART rrm1_1 179 251 IPR000504 GO:0003723
Lapu3g02412 394 SMART rrm1_1 90 162 IPR000504 GO:0003723
Lapu3g02412 394 Gene3D - 173 298 IPR012677 -
Lapu3g02412 394 MobiDBLite consensus disorder prediction 15 37 - -
Lapu3g02412 394 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 266 IPR000504 GO:0003723
Lapu3g02412 394 PANTHER GEO13361P1-RELATED 176 365 - -
Lapu3g02412 394 MobiDBLite consensus disorder prediction 370 394 - -
Lapu3g02412 394 MobiDBLite consensus disorder prediction 259 307 - -
Lapu3g02412 394 MobiDBLite consensus disorder prediction 266 289 - -
Lapu3g02412 394 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 237 IPR000504 GO:0003723
Lapu3g02412 394 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 157 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02412 Lapu-Chr3 45787460 45792448 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02412 161 253 C2H2 Transcription Factor Family AT2G19380 31.183 3.20e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02412 K12741 - gmx:100816590 549.28