Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02400 ATGGACCTTGCAGCTCAAACTTACAATACCACTTCTAACGCTTACAAGCTTGCTCTTCATTTTCAGCAACTCATCAAAGATCCCTTCAGACCCACTTCCCTTGCTAGAAGGATGATTATGACGAAGAAGATGCAAGTGATTATAGGGATGAACACATGGACAGAAGCAGCTTCAGTGGCTGAATCAGGACGCAAATCTCAAGTTCCTGTCATATCCTTTGCAGCTCCTACGATTACCCCATCAGTGATGCCAATTCGCTGGCCTTCCTTGGTAAGAATGGCCAACAATGGTACTGCATATGCAAAATGTGTTGCAGACATTGTACATGCTTATAATTGGCAGAGAGTAGTAGTCATTTATGAAGATGGAGATTATGAGATGCTAGCCCTGCTATCTGAGACCCTCCAAGATGTTGGTTCACTGATCGAGTACCGTTTAGCTCTTCCATCTCTTTCTTATCTTTCTAATCCTGGAGACTTCATTCACGAAGAGCTGTTTAAGGTGATTGAAAATACACAATCCCGGGTGTTCATTGTTCTGCAATCATCACTAGAAATGGTGATTCATTTGTTCAGAGAAGCTTCACAAATGGGACTTGTGGATGGAGAATCGGCTTGGATAATCCCAGAGAGCATAACTAATTTGCTTGATTCTGTTAACAAGTCTGCTATTTCCTACATGGAAGGAGCTTTAGGAATCAAGACATACTACTCTGAAGTTAGCAGTGAATATCAAAATTTTGAGGCTCAGTTCAAGAAATCTTTTCGTGCCAAGTATCCTGAGGAGGATAACAGCAACCCGGGATTTTATGCTCTGCAAGCACATGATAGCATTAAAATTGTTGCACAAGCAATAGAAAGAATGGAGAGTGGCAGAAAGACTCTGCTAAGAGAAATACTTTCTAGCAATTTCTTTGGCTTAAGTGGAGAAATTCGATTTGAAGCAGCGCAGCTCTTGCAGAATCCTACCTTCAGGATTGTAAATGTACATAGGAAGAGTTACAGAGAGTTAGACTTTTGGACTCCAGAAGGCGGGTTCATGAGTAGCCTTCCTACGGAACAAGGTTCAAACAGTGTTTCTAGGAACACAGAAAGTTTGAGTGGCGTTGTAATATGGCCAGGGAAACTAAACAGAATTCCAAAGGGCTGGAATCTGCCTACTAAACAAAAACGAATGCGAATAGCGATTCCTGGAAGAACCTCCTTTTCCAGGTTTGTCAAGGTTGATCATGACAAGCTTCCAAATTTATATAAATACACTGGATTCTGCATTGAAATTTTTGAGAAGGTCTTACCCCTTTTGGGGTATGACCTGCCATTTGACTTCTATCCCATCAATGGAACCTATCCCGATCTGGTTCAACTGGTCTATAACAAGACTTATGATGCTGTTGTTGGAGACGTGACCATATTAGAAGAAAGATTGCAATATGTAGATTTTACGGTGCCGTACGCAGAATCAGGGTTGTCAATGATAGTTACGGAAAAGTCCGAAGAATCGACATGGATGTTTATGAAGCCCTTCACCTGGCAAATGTGGGTGGCAACTGGTGCCGTGTTGATTTACACAATGATAGTTGTGTGGTGCCTCGAGCGGAAACCCAATCCTGAGTTTCAAGGCAATTGGAAAAGCCAGATCAGCACTGCACTTATGTTTACCTTCTCTTCTCTATTCTTTGCTCATAGGGAGAAAATTTATAGTGACTTAACTCGAGTGGTGATGGTATCGTGGCTGTTTCTAGTTTTGATTCTTAACTCGAGCTACACTGCTAGTCTTTCATCCATGCTCACAGTTCAACGACTGCGACCAAATGTGACTGGCATGGAGTTTCTGAAGAAGAACAACATGAAAATTGGTTGTGACGGTGACTCATTTGTTAGGACATACCTAGAGAAAGTAGAAGAATTCAAGCCAGAGAACATCGTACACATTCATAGTGAATACAGTTATGAAGATGCATTCAAAAACAACACAATAGCGGCTGCTTTTCTGGAAATCCCCTACGAAAAAGTATATATCAGTAAATATTGCAAGGGATACTCTGCCTTCGTACCTACCGCCAAATTCGGAGGACTGGGATTTGTGTTCCAGAAAGGCTCCCCAGTGGCGAGAGACTTTTCCAGAGCTATACTCAAGCTCATAGAGAACGGAGAAGTGAAGAAGTTAGAAGATAAATGGTTGAACTCTTCAGGTGAGTGCTTCAACAATTCGACCTCCGAGAGTAGAGAAAGTTTGAGGCTTGGAAGTTTCTGGGTTCTGTACGTGATTTCTGGTGCCACTTCTACCATTTGTTTTCTACTTTACACCATCCAGTCGCTGAAATCTAGTCAAACATACCAATATGAGGCAGAAGAACGTAATGGCAACCTTAGTGACGAAAGCCGATGGAAAAGGATATTCGTTATAGCTAAGCTGATCTACAACAGAAAGCGTGCAGCACTCGTACACGAGCATCAACAGGCAATGGCTCCACAATTACCAGATATCATAACGGTGTCTTCCCCGCCGATGGTTACTATTCACAGCCCGTGA 2532 0.4226 MDLAAQTYNTTSNAYKLALHFQQLIKDPFRPTSLARRMIMTKKMQVIIGMNTWTEAASVAESGRKSQVPVISFAAPTITPSVMPIRWPSLVRMANNGTAYAKCVADIVHAYNWQRVVVIYEDGDYEMLALLSETLQDVGSLIEYRLALPSLSYLSNPGDFIHEELFKVIENTQSRVFIVLQSSLEMVIHLFREASQMGLVDGESAWIIPESITNLLDSVNKSAISYMEGALGIKTYYSEVSSEYQNFEAQFKKSFRAKYPEEDNSNPGFYALQAHDSIKIVAQAIERMESGRKTLLREILSSNFFGLSGEIRFEAAQLLQNPTFRIVNVHRKSYRELDFWTPEGGFMSSLPTEQGSNSVSRNTESLSGVVIWPGKLNRIPKGWNLPTKQKRMRIAIPGRTSFSRFVKVDHDKLPNLYKYTGFCIEIFEKVLPLLGYDLPFDFYPINGTYPDLVQLVYNKTYDAVVGDVTILEERLQYVDFTVPYAESGLSMIVTEKSEESTWMFMKPFTWQMWVATGAVLIYTMIVVWCLERKPNPEFQGNWKSQISTALMFTFSSLFFAHREKIYSDLTRVVMVSWLFLVLILNSSYTASLSSMLTVQRLRPNVTGMEFLKKNNMKIGCDGDSFVRTYLEKVEEFKPENIVHIHSEYSYEDAFKNNTIAAAFLEIPYEKVYISKYCKGYSAFVPTAKFGGLGFVFQKGSPVARDFSRAILKLIENGEVKKLEDKWLNSSGECFNNSTSESRESLRLGSFWVLYVISGATSTICFLLYTIQSLKSSQTYQYEAEERNGNLSDESRWKRIFVIAKLIYNRKRAALVHEHQQAMAPQLPDIITVSSPPMVTIHSP* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02400 843 CDD GluR_Plant 390 727 - -
Lapu3g02400 843 Gene3D - 288 395 - -
Lapu3g02400 843 FunFam Glutamate receptor 100 265 - -
Lapu3g02400 843 Gene3D - 98 266 - -
Lapu3g02400 843 Pfam Ligand-gated ion channel 729 758 IPR001320 GO:0015276|GO:0016020
Lapu3g02400 843 SMART GluR_14 391 729 IPR001320 GO:0015276|GO:0016020
Lapu3g02400 843 Pfam Receptor family ligand binding region 4 331 IPR001828 -
Lapu3g02400 843 FunFam Glutamate receptor 501 631 - -
Lapu3g02400 843 CDD PBP1_GABAb_receptor_plant 1 350 IPR044440 -
Lapu3g02400 843 PIRSF IGluLR_plant 1 825 IPR017103 -
Lapu3g02400 843 Gene3D - 402 500 - -
Lapu3g02400 843 FunFam Glutamate receptor 391 503 - -
Lapu3g02400 843 Gene3D - 633 730 - -
Lapu3g02400 843 SUPERFAMILY Periplasmic binding protein-like I 9 383 IPR028082 -
Lapu3g02400 843 Gene3D - 501 632 - -
Lapu3g02400 843 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 22 774 IPR015683 -
Lapu3g02400 843 SUPERFAMILY Periplasmic binding protein-like II 368 728 - -
Lapu3g02400 843 Pfam Bacterial extracellular solute-binding proteins, family 3 418 728 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02400 Lapu-Chr3 45591115 45594638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02400 16 785 Ion Channels AT2G29120 34.410 4.96e-142 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02400 - - gmx:100780320 1376.69