Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02372 ATGGGGGATCGGGGTTCGGGCGCTGCGAAACCGATTTGGATGAAGCAAGCAGAGGAGGCGAAGCTGAAGAGCGAGGCGGAGAAGGCCGCGGCGGCGAAGGCGGCGTTCGAGGCCACGTTCAAGGGTTTGGAGAAGAATCGGGAGAAGGGTGGGGGCGTTGTTCAATCGGACAGTGAGTCGGAGGAGTACGAGGACCTGGCCCATAAGCCCATTGGGCCGGTCGATCCTTCTAAGTGCACTGCAGCAGGGACCGGGATCGCCGGCGGAACGGCGTGCGCTCCGTCATCGTTTGTGGTGGTCGCTAAAGACGCCGATGAGAGGAAGGTTTCCAACGGGGGCGCGCAAATCAAGGTCAGGGTGACGCCAGGGTTGGGCGTTGGAGGGTCTGAGCAAGAAGGGATGGTGAAGGATATGGGTGATGGAACTTATACTGTGACTTATGTGGTGCCCAAGCGAGGGAATTATATGGTCAGTGTTGAATGTAATGGGAGGCCTATCATGGGGAGTCCCTTTCCCGTATTTTTCAGTGCAGCAGGTAATGGTAATGGAGGGCTGCTGGGTTTAGCTCCTGCATCTACATTTCCAAACCTGGTTAATCAAACTATGCCGAACATGCCGAATTACTCTGGGTCAGTTTCAGGGGCATTCCCTGGATTGTTGGGAATGATTCCAGGGGTTGTTGCTGGAGCTTCTGGGGGTGCTATTTTGCCTGGAATTGGGGCCTCACTTGGGGAAGTTTGTCGTGATTACCTTAATGGGCGTTGTGCGAAAGTAGATTGTAAGTTGAATCACCCTCCTCATAATTTGCTAATGACTGCATTAGCTGCGACAACTTCAATGGGAACACTTAGCCAAGCTCCTATGGCACCTTCTGCCGCTGCAATGGCTGCTGCTCAGGCAATAGTTGCTGCACAAGCACTTCAAGCGCATGCAGCTCAGGTGCAAGCTCAGTCGGCGAAAGATTCTGCTGGTTCACCTGAAAAGTCTAGTAAAGACGATGCATTGAAGAAAACCCTTCAAGTTAGCAATCTTAGCCCTCTTCTCACTGTGGAACAGCTAAAGCAACTCTTTGCATTCTGTGGCACTGTTGTTGAATGTACAATCACTGATTCAAAGCATTTTGCTTATATAGAATACTCAAAGCCTGAAGAGGCAACTGCTGCTCTGGCATTAAACAACATAGATGTTGGGGGGCGCCCTTTGAATGTTGAAATGGCAAAATCACTTCCTCAAAAGCCATCTGTGGCGAATTCTTCACTTGCTTCATCATCTCTTCCTCTGATGATGCAGCAAGCTGTTGCAATGCAACAGATGCAATTCCAGCAAGCACTGTTGATGCAACAAACTATGACTGCACAGCAGGCTGCTAATCGAGCTGCAACCATGAAATCTGCCACAGAGTTAGCTGCAGCCCGAGCTGCAGAAATAAGCAAGAAATTGAATCCTGATGGACTTGAAATTGAAGAGAAAGAGACAAAGCAAAAATCCAGATCACCTTCTCCCCCTCGTGGAAGATCTCGTTCAAAGTCAAGATCTCCTATCAATTACCGGAGAAGGAGGAGGTCTCGGTCTTATTCACCTGCTCGTCATTCTAGGGATCATAGATCTAGATCACCATTGAGGTCCCATCATTATTCGAGCTATGAAAGGGAAAGGCGCTATAGAGATATTAGGGAACATGGTGATAGATACAGAAAACGAGATTTGGATAGATCAGTTGATCATCGTTTATCTGGTTCAAGAAGAAACAAAAGTAGGAGTGTTAGTCCTCATACGAGGAAATCATCTGTTTCTCCAAAACGTCATAGAGAAATTTCACCTCATAGAGGAAGGAAACAGTCACGTGCTGATTCTGGCTCTCCAAGTCGTCGCAGAGGTAGATCTTCTCCGAAGACTGATGAAAAAAAATTAAGAAACAGAAGGCGCTCAAGGTCAAGATCATCAGATGATAGGGTTCACTCTAGCAAAAAGGAAGAAATCTTGCATGGAAAGTCTAAACACAAAGAGAGAAGGCGATCCAGGTCAGCGTCTGTGGATGAAAAGCCTCACAGAAGGAGCCGATCATCCCCAAGAAAAGTAGAGGAAAGTAGATCCAGATACAAAAAACGCTCAAGGTCTAAATCTGTGGATGATAAGCATGATTCACCTGATAGATTGGATGAAAACAGAAATAGAAGATTGAGGCATAGTGACAAAAGGCACTCTAGGTCAAGATCTACAGAAAATAGGGATCAATCTAATGTCAGGTTAGATGAAAGCAAAAATGAGAATTCAAAACATCGGGATACTAAAAGGGGTAGGTCAAAGTCTGTTGAAGGGAAGCATCGCTCAAAAGATAAATCTGGTGAAAATAGGGATAAAAAATCAAAACATCGTGATAGAAGGCGTTCAAGGTCAATATCATTAGAAGGTGAGCATGATAAAGGAGGCACTTGGCCCCATATAAATTTGGTTGAAAAAATTTTTGAACTGAAACAGTCCAGGTCAAGGCTCCCTGAAGGTAAGCATCTCTCCAGTGATAAATATGGAAATAGAGATGAAAAATCAGAGCACCAAATGAAAACCCAACCTAAGTCAAAATCAGAACAATTTGATGGGAGTGAGTCCTTCCAAGGAAATTTCAAGGATTATGATTCAAAGGTGAAATCAGAATCTGATTCTGGATCTCCAGAAGTTAAGCATAATTTGAGCGATGGAGAAAATACAACTTTGGAAGAAAATTCAAAACGTTGTGGAGATGCCTTGCTGGAACCAATTATAAATGTGAAGGACTCAATTATCCTGAATGATACTGGGATGCTGACTTCTGCGAATGGTAGCTACAAGTTAGAATCGTCAAATGAAGCTGATGATAACCCAGGATGGATATGCGTGGAAGAAGTGGGAAATATAAAATATTAA 2901 0.4523 MGDRGSGAAKPIWMKQAEEAKLKSEAEKAAAAKAAFEATFKGLEKNREKGGGVVQSDSESEEYEDLAHKPIGPVDPSKCTAAGTGIAGGTACAPSSFVVVAKDADERKVSNGGAQIKVRVTPGLGVGGSEQEGMVKDMGDGTYTVTYVVPKRGNYMVSVECNGRPIMGSPFPVFFSAAGNGNGGLLGLAPASTFPNLVNQTMPNMPNYSGSVSGAFPGLLGMIPGVVAGASGGAILPGIGASLGEVCRDYLNGRCAKVDCKLNHPPHNLLMTALAATTSMGTLSQAPMAPSAAAMAAAQAIVAAQALQAHAAQVQAQSAKDSAGSPEKSSKDDALKKTLQVSNLSPLLTVEQLKQLFAFCGTVVECTITDSKHFAYIEYSKPEEATAALALNNIDVGGRPLNVEMAKSLPQKPSVANSSLASSSLPLMMQQAVAMQQMQFQQALLMQQTMTAQQAANRAATMKSATELAAARAAEISKKLNPDGLEIEEKETKQKSRSPSPPRGRSRSKSRSPINYRRRRRSRSYSPARHSRDHRSRSPLRSHHYSSYERERRYRDIREHGDRYRKRDLDRSVDHRLSGSRRNKSRSVSPHTRKSSVSPKRHREISPHRGRKQSRADSGSPSRRRGRSSPKTDEKKLRNRRRSRSRSSDDRVHSSKKEEILHGKSKHKERRRSRSASVDEKPHRRSRSSPRKVEESRSRYKKRSRSKSVDDKHDSPDRLDENRNRRLRHSDKRHSRSRSTENRDQSNVRLDESKNENSKHRDTKRGRSKSVEGKHRSKDKSGENRDKKSKHRDRRRSRSISLEGEHDKGGTWPHINLVEKIFELKQSRSRLPEGKHLSSDKYGNRDEKSEHQMKTQPKSKSEQFDGSESFQGNFKDYDSKVKSESDSGSPEVKHNLSDGENTTLEENSKRCGDALLEPIINVKDSIILNDTGMLTSANGSYKLESSNEADDNPGWICVEEVGNIKY* 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02372 966 Gene3D - 297 419 IPR012677 -
Lapu3g02372 966 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 280 670 - -
Lapu3g02372 966 MobiDBLite consensus disorder prediction 829 906 - -
Lapu3g02372 966 MobiDBLite consensus disorder prediction 610 636 - -
Lapu3g02372 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 408 IPR000504 GO:0003723
Lapu3g02372 966 SMART flmn_3 75 178 IPR001298 GO:0005515
Lapu3g02372 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 341 401 IPR000504 GO:0003723
Lapu3g02372 966 MobiDBLite consensus disorder prediction 875 906 - -
Lapu3g02372 966 SUPERFAMILY RNA-binding domain, RBD 325 414 IPR035979 GO:0003676
Lapu3g02372 966 MobiDBLite consensus disorder prediction 734 788 - -
Lapu3g02372 966 MobiDBLite consensus disorder prediction 672 727 - -
Lapu3g02372 966 MobiDBLite consensus disorder prediction 567 581 - -
Lapu3g02372 966 Gene3D Immunoglobulins 73 180 IPR013783 -
Lapu3g02372 966 MobiDBLite consensus disorder prediction 500 539 - -
Lapu3g02372 966 MobiDBLite consensus disorder prediction 859 874 - -
Lapu3g02372 966 MobiDBLite consensus disorder prediction 567 812 - -
Lapu3g02372 966 Coils Coil 14 35 - -
Lapu3g02372 966 Pfam Filamin/ABP280 repeat 73 171 IPR017868 -
Lapu3g02372 966 CDD RRM_SF 339 404 - -
Lapu3g02372 966 MobiDBLite consensus disorder prediction 643 665 - -
Lapu3g02372 966 MobiDBLite consensus disorder prediction 829 858 - -
Lapu3g02372 966 MobiDBLite consensus disorder prediction 796 812 - -
Lapu3g02372 966 ProSiteProfiles Zinc finger C3H1-type profile. 246 267 IPR000571 GO:0046872
Lapu3g02372 966 SMART rrm1_1 338 404 IPR000504 GO:0003723
Lapu3g02372 966 MobiDBLite consensus disorder prediction 480 498 - -
Lapu3g02372 966 ProSiteProfiles Filamin/ABP280 repeat profile. 71 175 IPR017868 -
Lapu3g02372 966 MobiDBLite consensus disorder prediction 480 552 - -
Lapu3g02372 966 SUPERFAMILY E set domains 73 173 IPR014756 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02372 324 407 Eukaryotic Initiation Factors Gene Family AT2G23350 35.556 8.90e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02372 - - gmx:100790138 1335.09