Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02362 ATGCCTGCCCTCATCGATCTCAACAGCGCCACCGAGGACCATGAAACGCCATCGTCTCGCCCCTCCTCCGTCTGTCTCGAACTCTGGCACGCCTGCGCGGGTCCTATGATCTCCTTGCCCAAGAAAGGGACCCTTGTCGTGTACTTCCCTCAAGGACACTTGGAACAACACCTTCACGATTTTCCGCTCCCTGCTTCTGCTAACATCCCCTCCCATCTCTTCTGTCGCGTTCTCGATGTCAAGCTCCATGCTGAGGAAGGGAGCGATGAAGTGTATTGCCAGGTGGTGTTGGTTCCCGAAAGTGAGCAAGTGCATCCGAAGTTGCGGGAAGGGGAAATTGATGCTGATGGTGAAGAGGAGGATGCTGAAGCTGTGATGAAGTCCACCACACCCCACATGTTCTGCAAGACTTTGACAGCTTCTGATACTAGCACTCATGGAGGATTCTCTGTGCCTCGTCGTGCTGCTGAAGATTGCTTTCCACCTCTGGATTACAGTCAACAGAGACCTTCACAGGAGCTTGTGGCTAAGGATCTGCATGGCCAAGAATGGAGGTTTCGACACATTTATAGGGGGCAACCCCGACGACACTTGCTTACCACTGGGTGGAGTGCATTTGTGAACAAGAAGAAACTTGTATCTGGAGATGCTGTTCTGTTTCTTAGGGGTGAGGATGGCGAACTAAGATTGGGAATTCGTAGGGCTGCTCAATTGAAAAGTGGCAGTACCATTTCAACTCTTGCTGGCCAGCAATTGAATCTTAACAGTCTTATGGATGTGGTTAATGCTTTATCTGCAAGATGTGCCTTTAGCGTTCACTATAATCCAAGGGTCAGCTCGTCTGAGTTCATCATACCCATCAACAAATTCTTAAAGAGCCTTGATTATTCCTATTCAGTTGGAACAAGATTCAGGATGCGTTTTGAAACTGAAGATGCTTCAGAACGAAGATTTACAGGATTGATTGTTGGAATTACTGATGTGGATCCTGTTAGATGGCCTGGATCAAAATGGAGATGCCTAATGGTAAGGTGGGATGACTTAGAAGCCACAAGGCATAATAGGGTTTCACCATGGGAGATTGAGCCATCTGGTTCTGCACCTGCTGCAAATAACTTGATATCAGCTGGTTTGAAGAGGACCAAGATTGGATTGGCTTCAACCAAGCTAGATTTTCCAGTTTCCAATGCAATTGGAGCATCAGACTTTGGCGAATCACTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATGTTGGCTATTAATACTACTTTTGATAGTATTAATGGTCAGAGCCACCAGCTATCTGATTTGAGGAGATGCTATCCTGGCTCAAACTGTCCTAGGATTGCTGCAACCGGAAATAACATTGGAATTCCCCAAGTGAGTTCCAATGTTTCCTGCAATGGCATAGGCTTTGGTGAATCTTTCAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATATGGAAGGGCCCTATCTGTTGATGAGGCTTGTGGAAATGGTCGCTTTGGACCTTTTGATGGTTACCATACACTGAGATCCAGAAATGGATGGTCTTCCCACTTGAGTACCAATTCATCACATTTGCATCCACCTGTTCCATCTGGGCAAGTTTCATCTCCGTCATCTGTGTTAATGTTCCAGCAAACAGTCAATACAGTTTCAAACTCTGATTATAACAAGAAAATTAGTCAGGTGATGGAAGGTAAAGTCCATCAACAACGTTCATACACTTCTGAAGTCAAAGGCGGAAAATTTGTATCAACCCCTTATGAGCCTCTTAGTGGACTAGCTCTGGAAGGTACAAATTGTTTTGGTGTCTCAAACTTGCATACTCAGTTAGAAAGTTCACGTTCACACGATTCTTCTTCAGCACTTCGAGCTGGTCAGGAGTTGGTTCCTTCGTGTAAAAGTCGATGCAGAGTCTTTGGCTTTTCATTAACTGAGGGTGCTCCTGTTGCAAGTAAAGAAGTAGCTGGTGCCGACCCATCTGCAGTCACATGTTCTGGACCTTCCTTTGCAAGGCACGTTGAAGATGATTTCCATCCAGGGCTTGCACTTAGGAGCAAGGCAGTGGGAAGTTATTGCACAAAAGGTGTGCTGCAATATTGA 2130 0.4601 MPALIDLNSATEDHETPSSRPSSVCLELWHACAGPMISLPKKGTLVVYFPQGHLEQHLHDFPLPASANIPSHLFCRVLDVKLHAEEGSDEVYCQVVLVPESEQVHPKLREGEIDADGEEEDAEAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKSGSTISTLAGQQLNLNSLMDVVNALSARCAFSVHYNPRVSSSEFIIPINKFLKSLDYSYSVGTRFRMRFETEDASERRFTGLIVGITDVDPVRWPGSKWRCLMVRWDDLEATRHNRVSPWEIEPSGSAPAANNLISAGLKRTKIGLASTKLDFPVSNAIGASDFGESLRFQKVLQGQEMLAINTTFDSINGQSHQLSDLRRCYPGSNCPRIAATGNNIGIPQVSSNVSCNGIGFGESFRFQKVLQGQEILPSQPYGRALSVDEACGNGRFGPFDGYHTLRSRNGWSSHLSTNSSHLHPPVPSGQVSSPSSVLMFQQTVNTVSNSDYNKKISQVMEGKVHQQRSYTSEVKGGKFVSTPYEPLSGLALEGTNCFGVSNLHTQLESSRSHDSSSALRAGQELVPSCKSRCRVFGFSLTEGAPVASKEVAGADPSAVTCSGPSFARHVEDDFHPGLALRSKAVGSYCTKGVLQY* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02362 709 SMART B3_2 134 236 IPR003340 GO:0003677
Lapu3g02362 709 SUPERFAMILY DNA-binding pseudobarrel domain 127 243 IPR015300 -
Lapu3g02362 709 Pfam B3 DNA binding domain 134 235 IPR003340 GO:0003677
Lapu3g02362 709 FunFam Auxin response factor 132 236 - -
Lapu3g02362 709 Pfam Auxin response factor 261 341 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lapu3g02362 709 CDD B3_DNA 132 234 IPR003340 GO:0003677
Lapu3g02362 709 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Lapu3g02362 709 FunFam Auxin response factor 297 368 - -
Lapu3g02362 709 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 654 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lapu3g02362 709 Gene3D - 297 370 - -
Lapu3g02362 709 Gene3D - 132 236 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02362 Lapu-Chr3 45054127 45060549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02362 133 491 B3 DNA Binding Superfamily AT2G33860 59.669 1.10e-145 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lapu3g02362 B3 8.8e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02362 K14486 - gmx:100808119 1224.54