Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02355 ATGGCGGGGGTTTCTCTCAAGTGCGGTGACTGCGGTGCTCTGTTGAGAACAGTAGAAGAAGCCCAAGACCATGCCGAACTCACTTCCCACTCCAACTTCTCCGAATCCACCGAACCGGTTCTCAACCTCGTTTGCACCGCTTGCTCCAAACCCTGCCGATCCAAAACCGAGAGTGATTTGCACATTAAAAGAACGGGCCACACTGAATTTGTTGACAGGACTTCCGAGACCGTAAAACCGATTAGTTTGGAGGCACCGAAGGTGGATGCAACCGCTTCGTCGGAAAACCCTTCCGGTGCCGCATCAACTGATCAAAATGAAGAAATGACTGTTCCTGAAGTGGACAAAAAGCTGCTTGAGGATCTTGAATCAATGGGTTTTTCCACGGCACGGGCTACGCGGGCGCTGCATTACTCTGGTAATGCTGGCCTCGAGGCTGCTGTAAACTGGATAGTAGAGCATGAGAATGATCCTGACATAGATCAGATGCCCTTGGTACCTGCCAACGTCAAAATGGAGGCTCCTAAACCATCTCTTACCCCTGAAGAACTGAAGGCCAAACAACAGGAACTAAGGGAGAGAGCTCGCAAGAAGAAAGAAGAGGAAGAGAAGAGGACAGAGAGAGAAAGAGAAAAGGAGAGAATTCGTGTTGGTAAGGAGATGCTGGAAGCAAAGAGGATTGAAGAAGACAATGAGAGGAAACGGTTGTTGGCCTTGAGAAAAGCAGAGAAAGAGGAAGAGAAAAGGGCTAGGGAGAAAATCAAGCAAAAGTTGGAAGAAGACAAGGCAGAAAGAAGGCGGAGACTTGGATTGCCTCCAGAAGAACCTTCAGCAGCCAAATCTTCACCTGCACCTGTTGTGGAGGAGAAAAAGAGTTTTGTGCCTGTTAGACCTGCCACAAAAGCTGAGCAAATGAGAGAGTGCCTCCGTTCTCTCAAGCAGACCCACAAGGAAGATGACGCCAGAGTAAAGAGGGCATTCCAAACTCTTCTAACTTATGTGGGGAATGTTGCCAGAAATCCCGATGAGGAAAAATTCAGAAAGATACGTCTTAGTAACCAATCTTTTCAGGACAGAGTTGGTTCCTTGAAAGGGGGCATTGAATTTCTAGAAATTTGTGGGTTTGAGAAGATGGATGGTGGCGAGTTCTTGTTTTTGCCTAGGGACAAAGTTGAGATGGCGATCCTGAACTCAGCCGGATCTGAACTAGACTCTGCAATAAAGAATCCCTTTTTCGGAGTTCTTTAG 1248 0.476 MAGVSLKCGDCGALLRTVEEAQDHAELTSHSNFSESTEPVLNLVCTACSKPCRSKTESDLHIKRTGHTEFVDRTSETVKPISLEAPKVDATASSENPSGAASTDQNEEMTVPEVDKKLLEDLESMGFSTARATRALHYSGNAGLEAAVNWIVEHENDPDIDQMPLVPANVKMEAPKPSLTPEELKAKQQELRERARKKKEEEEKRTEREREKERIRVGKEMLEAKRIEEDNERKRLLALRKAEKEEEKRAREKIKQKLEEDKAERRRRLGLPPEEPSAAKSSPAPVVEEKKSFVPVRPATKAEQMRECLRSLKQTHKEDDARVKRAFQTLLTYVGNVARNPDEEKFRKIRLSNQSFQDRVGSLKGGIEFLEICGFEKMDGGEFLFLPRDKVEMAILNSAGSELDSAIKNPFFGVL* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02355 415 CDD UBA_PUB_plant 113 161 - -
Lapu3g02355 415 Gene3D - 115 161 - -
Lapu3g02355 415 MobiDBLite consensus disorder prediction 178 214 - -
Lapu3g02355 415 SUPERFAMILY PUG domain-like 297 411 IPR036339 -
Lapu3g02355 415 PANTHER F13M7.16 PROTEIN 1 415 - -
Lapu3g02355 415 MobiDBLite consensus disorder prediction 89 108 - -
Lapu3g02355 415 MobiDBLite consensus disorder prediction 172 214 - -
Lapu3g02355 415 CDD PUB_UBA_plant 309 415 - -
Lapu3g02355 415 Coils Coil 227 264 - -
Lapu3g02355 415 MobiDBLite consensus disorder prediction 243 273 - -
Lapu3g02355 415 MobiDBLite consensus disorder prediction 243 300 - -
Lapu3g02355 415 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 113 154 IPR015940 -
Lapu3g02355 415 SUPERFAMILY UBA-like 101 167 IPR009060 GO:0005515
Lapu3g02355 415 SMART PGNneu 325 388 - -
Lapu3g02355 415 SMART uba_6 115 153 IPR015940 -
Lapu3g02355 415 Coils Coil 184 216 - -
Lapu3g02355 415 Pfam UBA/TS-N domain 119 151 IPR015940 -
Lapu3g02355 415 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Lapu3g02355 415 Gene3D - 307 405 - -
Lapu3g02355 415 MobiDBLite consensus disorder prediction 83 111 - -
Lapu3g02355 415 Pfam PUB domain 322 392 IPR018997 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02355 Lapu-Chr3 44979755 44990566 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02355 95 415 C2H2 Transcription Factor Family AT1G04850 77.019 1.07e-151 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02355 K24348 - gmx:100794687 677.937