Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02346 ATGTTTCTCCGCAAAACCCTACTTCACCTCTCTTCTCTATGTCTCTTCCTCATCATCACCACCTACTCGGTGGCCGCCGCCGATGATGCCGTCATGTCCAATTTCCTTCAATCGCTCACGCCTCCACCTTCAAATTGGTCTCAGACAACCCCATTCTGCCATTGGGAGGGTGTCCAATGCGATTCTTCCAACCGCGTCACCAGCATAAGCCTCGCTTCACGGTCCCTCACCGGAACTCTCCCCTCCGATCTCAATTCCCTCTCCCAACTCCGCACCCTCTCCCTCCAAGACAATGCACTCTCCGGCCCCATCCCCTCTCTCGCCCAACTCTCCTTCCTCCAAACGGTCTACCTCAACGGGAACAACTTTTCCGCCGTCCCCTCCGCCGCCTTCGCCGCCCTCACCTCCCTCCAAACCCTCAGCCTAGGCTCCAACCCTTCCCTCTCCCCATGGACCTTCCCCACCGACCTCACCTCCTCCACTAACCTAGTCGACCTCGACCTCGCCACTGTTTCCCTCTCCGGTCCCTTACCCGACATCTTCGACAAATTTCCCTCTCTCCTGAGCCTTCGCCTCTCCTACAACAACCTCACCGGTAGTTTACCCTCCTCTCTCGCCGTCTCCACAATCTCCTCGCTCTGGCTCAACAACCAGGCCACCGGTTTGTCCGGTACTCTCTCCGTTCTCTCCAACATGACACAGTTGAGCCAGGCCTGGCTCCACAAGAACCAGTTCACCGGTTCCATTCCCGATTTGTCCCAGTGCAAGGGCCTGTTTGACTTGCAGCTCCGGGATAATCAGCTAACCGGCGTGGTCCCTGTTTCCTTGACAAGTCTTTCGAGTCTAAAGAATGTTTCTCTGGATAACAATGAGCTTCAGGGCCCTGTGCCTGCTTTTGGAAAGGGTGTGAAGGTTACTCTCGATGGCATCAATAGCTTCTGTCGAGATACTGCCGGTGATTGCGATTCCAGGGTGATGGTTTTGCTTCAGATTGCTGAAGCGATTGGTTATCCCATTCAGTTGGCGAATGCGTGGCAGGGGAATGACCCTTGTAATGGCTGGAACTTTGTTGTGTGCTCTGCTGGGAAGATTGTTACTGTCAATTTCGGGAAGCAGGGTTTTCAGGGTACTATCTCGCCTGCATTTTCGCAATTAACTGATTTGCGAAGCTTGCTTCTCAATGGGAATAATTTGACCGGTTCTATTCCTGAGAGTTTGACCTCTTTGTCTCAGCTTCAGACTCTTGATGTTTCTGATAACAACCTCTCTGGAGAAATTCCCAAGTTCCCTTCCAAGGTGAAGTTAGTGACTACCGGTAATGCTAGGCTTGGGAAAGATCCTAGTCCTGGAGGTGGAGCAAGTGGGTCTACTCCTTCAGGATCTCCACCTGGGGGAAGTGGTGGTGAATCTGCTAAGGGTAGTGCTTCTTTGTCACCAGGTTGGATTGCTGGTATAATTGTTATCGTTCTGTTTTTCACTGCAGTGATATTGTTTGTGTCTTGGAAGTGTTATTCCAAAAGGCAGCGGGGGAAGTTCAGGAGGGTTAATGGTCGTGAAAATGGCAAGGGAAACTTTAAGATTGAGTCCGTCAATGTTTCTAATGGGTATGGTGGTGTTCCCAGTGAGTTGCAAAGCCAGAGCAGTGGTGATCCGAGTGACCTTCTTGCTGCTTTTGAAGGTAGAAATGGGACAATTTCAATCCAAGTTCTTCGACAGGTTACCAATAATTTCAGTGAGGAGAATATTTTAGGCAGGGGAGGGTTTGGAGTAGTTTATAAGGGGGAGTTGAATGATGGAACAAAGATTGCTGTTAAAAGGATGGAATCTGTTGCAATGGGAAACAAAGGACTAAACGAGTTCGAAGCAGAGATTGCAGTTCTTACCAAAGTTAGGCATAGACATTTGGTTGCTCTTCTAGGGTATTGCATCAATGGAAATGAAAGGCTTTTGGTGTATGAATATATGCCTCAAGGTACATTAACACAGCACCTGTTTGAGTGGCAGGGACATGGCTATGCTCCCTTGACATGGAAACAAAGGGTAACGATAGCTTTGGATGTTGCAAGAGGGGTGGAATACTTGCATAGCTTAGCTCAACAAAGCTTCATTCACAGAGACTTAAAACCCTCAAACATACTACTTGGTGATGATATGAGAGCAAAGGTTGCAGATTTTGGGTTGGTTAAAAATGCACCAGATGGGAAGTATTCTGTTGAGACTCGGTTGGCTGGAACATTTGGATATCTTGCACCCGAATATGCTGCTACTGGAAGAGTGACTACCAAAGTGGACGTTTATGCATTTGGTGTAGTTTTGATGGAACTTGTTACCGGTAGAAAGGCATTGGATGATACTGTGCCAGATGAAAGGTCTCATTTGGTTACATGGTTCCGTAGGGTGCTAATTAACAAGGAAAACATTCCGAAGGCAATTGATCAAATTCTCAACCCCGACGAAGAAACCATGGAGAGCATATATAAAGTGGCTGAACTGGCAGGCCATTGCACTGCTCGTGAACCGTACCAAAGGCCAGATATGGGTCATGCAGTGAATGTCTTGGTTCCTCTTGTGGAGCAATGGAAACCTACTAGTCATGAAGAAGAGGACAGCGCTGGTGGTGACTTTCAGATGAGCCTTCCTCAAGCTCTACGGAGGTGGCAAGCCGATGAAGGCACTTCCTCAATATTTAATGATATATCCATCTCACAAACCCAATCAAGCATCCCTTCTAAACCTACCGGATTTGCAGACTCCTTTGATTCAATGGATTGCCGGTGA 2778 0.4849 MFLRKTLLHLSSLCLFLIITTYSVAAADDAVMSNFLQSLTPPPSNWSQTTPFCHWEGVQCDSSNRVTSISLASRSLTGTLPSDLNSLSQLRTLSLQDNALSGPIPSLAQLSFLQTVYLNGNNFSAVPSAAFAALTSLQTLSLGSNPSLSPWTFPTDLTSSTNLVDLDLATVSLSGPLPDIFDKFPSLLSLRLSYNNLTGSLPSSLAVSTISSLWLNNQATGLSGTLSVLSNMTQLSQAWLHKNQFTGSIPDLSQCKGLFDLQLRDNQLTGVVPVSLTSLSSLKNVSLDNNELQGPVPAFGKGVKVTLDGINSFCRDTAGDCDSRVMVLLQIAEAIGYPIQLANAWQGNDPCNGWNFVVCSAGKIVTVNFGKQGFQGTISPAFSQLTDLRSLLLNGNNLTGSIPESLTSLSQLQTLDVSDNNLSGEIPKFPSKVKLVTTGNARLGKDPSPGGGASGSTPSGSPPGGSGGESAKGSASLSPGWIAGIIVIVLFFTAVILFVSWKCYSKRQRGKFRRVNGRENGKGNFKIESVNVSNGYGGVPSELQSQSSGDPSDLLAAFEGRNGTISIQVLRQVTNNFSEENILGRGGFGVVYKGELNDGTKIAVKRMESVAMGNKGLNEFEAEIAVLTKVRHRHLVALLGYCINGNERLLVYEYMPQGTLTQHLFEWQGHGYAPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELVTGRKALDDTVPDERSHLVTWFRRVLINKENIPKAIDQILNPDEETMESIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTSHEEEDSAGGDFQMSLPQALRRWQADEGTSSIFNDISISQTQSSIPSKPTGFADSFDSMDCR* 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02346 925 ProSitePatterns Protein kinases ATP-binding region signature. 583 605 IPR017441 GO:0005524
Lapu3g02346 925 Gene3D Ribonuclease Inhibitor 27 321 IPR032675 -
Lapu3g02346 925 ProSitePatterns Serine/Threonine protein kinases active-site signature. 702 714 IPR008271 GO:0004672|GO:0006468
Lapu3g02346 925 ProSiteProfiles Protein kinase domain profile. 577 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g02346 925 MobiDBLite consensus disorder prediction 903 925 - -
Lapu3g02346 925 Pfam Leucine rich repeat N-terminal domain 328 360 IPR013210 -
Lapu3g02346 925 Pfam Leucine rich repeat N-terminal domain 34 61 IPR013210 -
Lapu3g02346 925 FunFam Leucine-rich repeat receptor-like kinase 323 446 - -
Lapu3g02346 925 SUPERFAMILY L domain-like 34 434 - -
Lapu3g02346 925 Gene3D Transferase(Phosphotransferase) domain 1 655 877 - -
Lapu3g02346 925 FunFam Receptor-like kinase TMK4 26 319 - -
Lapu3g02346 925 SUPERFAMILY Protein kinase-like (PK-like) 563 853 IPR011009 -
Lapu3g02346 925 FunFam receptor protein kinase TMK1 538 654 - -
Lapu3g02346 925 Gene3D Ribonuclease Inhibitor 323 447 IPR032675 -
Lapu3g02346 925 SMART serkin_6 577 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g02346 925 Pfam Protein tyrosine and serine/threonine kinase 580 850 IPR001245 GO:0004672|GO:0006468
Lapu3g02346 925 CDD STKc_IRAK 583 856 - -
Lapu3g02346 925 SMART LRR_typ_2 184 207 IPR003591 -
Lapu3g02346 925 SMART LRR_typ_2 385 409 IPR003591 -
Lapu3g02346 925 SMART LRR_typ_2 110 133 IPR003591 -
Lapu3g02346 925 SMART LRR_typ_2 134 155 IPR003591 -
Lapu3g02346 925 Gene3D Phosphorylase Kinase; domain 1 540 654 - -
Lapu3g02346 925 MobiDBLite consensus disorder prediction 440 473 - -
Lapu3g02346 925 PANTHER OSJNBA0070M12.3 PROTEIN 12 925 - -
Lapu3g02346 925 FunFam receptor protein kinase TMK1 655 872 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02346 Lapu-Chr3 44862296 44865959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02346 66 868 Receptor kinase-like Gene Family AT1G55610 31.829 3.01e-92 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Lapu3g02346 PK_Tyr_Ser-Thr 2.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02346 - - gmx:100286794 1470.29