Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02311 ATGGAGTTAGAGGTGAAGGTGGTGGGAGGCATAGAGTCCTGTTTCGTATCCCTTCCCCTCTCTCTCATCCAAACTCTTCAGTCCACGCGCTCAACACCGCTTCCTCAAATCCTCGCCCTCGAGCTTCGCTCTCCTCCTCACACCTGGTTCGTCGCTTGGTCCGGCGCCACTTCTGCTTCTTCCGCCATAGAGGTTTCTCCTCAATTTGCGGAGTGCGTTTCCTTGCCGAATCACGCTAGTGTTAAAGTCAGAGCTGCTTCCAATGTGCCGCACGCTTCTCTGGTCACCATAGAGCCGAACACGGAGGACGACTGGGAAATCTTGGAGCTCAACGCCGACCTAGCCGAGGCTAAAATCCTCAACCAGGTCAGGATTGTCCATGAAGGGATGAGATTTCCTTTGTGGTTGCATGGTCACACTGTCATCACATTTCAAGTGGCTTCTGTTTATCCGAAGAATGTGGTGGTACAACTAATGCCAGGAACTGAAGTTGCTGTTGCTCCAAAAAGGCGCAAAAAAAGTTTGGATTCAGCAGGAGATTCACATTTAGACTCCTCTAACAAAGAGCATACTTTTAAGATGTTGCTTCGTTTACAAGATCCAGATGGATTATGTAGTGCCAGTACTCGTGTCAAAGGAGTTGACCTTCATGTAGGGCTTACTTCTGTTGCTTTTGTTCACCCAGAAACAGCCAAAAAATACTCATTCAACATGCTTCAGTTGGTTTTGATAGTACCCAGAGTATCCAAGGAGCATGTTAATAGTTCAAAAACCAATATTATGAAAAACAGAAGTGCTTCTACTACTAATGAAGTTGAGAATGTATATACAGACAAGACAGAATATCGACAAGCAATTGTTCATTTGATGATTTCAGAATTTGTGGCTAAAGGACATGTGATGATAGCCAAGTCTCTTCGCCTTTACTTGAGAGCTAGCCTACATTCATGGGTTTATTTGAAGGCATGCAATATTGTTTTGGAAAAAAATATTCCTTCTACCTCTCTTTTTCCGTGCCACTTCAAACTACCAAGGCAGGAGAATGCTGTTGAAAAAGATGGTCTAGAAGTTTCTCATGGCCACAACAATCTCATCGATAAAAAGGTCCAAGCAAAAGCTACATCAGGTGTCTTTGTGGATACTATAGATTGGTCAACCCAAAATAAAGTTCTAGCAGCTGTCTCTGATGAATCCAATTACAAAGCAGAGGAAGACGCCACAAATCAATCTCAGAATCAAAGGGGATTACAGAGTCTTGTACGACTATGGTATATCACACAACTTAAGGCAATTACTTCCATTTCAGGTATGGAGGTTAGTGCATTGATTATGGGTGATAAAACCTTGCTTCATTTTGAAGTAAGCTGTTACAAGTTTGGGAGTAATGGGAAGGTTCACTTGGCCTATAATCCTTCAGAGAACAGTGGCAAGGCAGCCGAAATGTTGTTTTTATTGACATTTGGTGAAGAATATCTGCATAATGGGAAACTTGGTGCATATGAAGTTGCTCTTGGTGGAGAACTCGATAACATTAGTATTGTGGACCTGAAGATTTTTGAAAGGATGAAATTGTGTGATCCTGTGTCTATTCTTTCTATAGAAGAGAGAACCTCTGAAGACCACATCAGTTCTAATCTATCTTCCCTTGGCTGGATGGAGAAAACTGCAGATGATGTTATCAATAGAATGTTGATATTGTTATGTTCTGCGTCTGGTCTGTGGTTTGGCTCACACAACTTACCACTCCCTGGACATGTTCTGATATATGGACCACCTGGCTCTGGGAAAACTATATTAGCAAGAACTGTGGCAAAATCCCTTGAGAACCGTGAGGACATCTTAGCACACATAATTTTTATTTCCTGCTCAAAACTTGCCTTTGAGAAGGTCCCAGTTATTCGCCAAGAACTTGCAAACTATGTAACCGAAGCTTTAAACCATGCTCCTTCTATCGTCATCTTTGATGATCTTGATAGCATAATTTCTTCCCCTGACTCTGAAGGATCTCAGCCGTCAATATCTGTTGCTGGACTCACAGATTTTCTGGTTGACATCATGGATGAATATGGGGAGAAGAGGCAAAACTCCTGTGGATTCGGACCAATAGCCTTCATAGCTTCCATACAATCCCTAGAGAAGATACCACAATCTTTAAGCTCTTCAGGACGGTTTGACTTTCACATAAAGCTGCCTGCTCCTGCAGCCTCTGAGCGCAGGGCTATGTTGAAGCATGAAATACAGAGACGTCACTTGCAATGTGATGATGACATCCTGCTCGACGTGGCTGTAAAATGTGATGGTTATGATGGTTATGATCTGGAAATATTAGTTGACAGAACTGTTCATTCTGCTGTTCGCCGATTTCTGCCTTCTAATGCTTCCGTTAATGTGCATGAGAGTCCAGCTATACTTAGGGAGGATTTCTCTCAGGCTATGCTTGATTTTCTTCCAGTTGCAATGCGTGATATCACAAAATCAGCTTCTGATGATGGCCGTTCTGGATGGGATGATGTGGGTGGTCTTGTTGACATTCGGAATGCTATTAAGGAGATGATAGAGCTGCCATCGAAGTTTCCAAAAACTTTTGCACAAGCACCTTTGAGGTTGCGGTCAAATGTCCTTTTATATGGTCCTCCTGGTTGTGGCAAAACTCACATAGTTGGTGCTGCTGCTACTGCTTCTTCACTTCGATTCATATCAGTGAAAGGGCCAGAGCTGTTAAACAAGTACATTGGTGCTTCTGAACAAGCTGTTAGGGATATATTCTCTAAAGCAGCAGCTGCAGCACCATGTCTACTTTTTTTCGATGAATTTGATTCTATTGCCCCCAAGAGAGGGCATGACAATACTGGAGTAACTGATCGAGTTGTTAATCAGTTTTTGACCGAGTTAGATGGTGTTGAGATTTTAACTGGTGTATTTGTGTTTGCTGCAACCAGTAGGCCAGACTTGCTTGATGCTGCACTGTTGAGACCTGGTAGGTTAGATCGTCTTCTATTCTGTGACTTTCCATCCTGGCAGGAGAGATTGGAAATTCTTGCTGTACTTTCTAGAAAATTACCAATGGACAAGGATATTGATTTGGCTACAATAGCTAATATGACTGAGGGATTCAGTGGAGCTGATCTCCAAGCTCTTCTATCAGATGCGCAGCTTGCAGCTGTTCATGATATTCTGGACAACGTGGATGCCTTTAGGCCAGAAAAAACACCCGTTATTACTGATGCTCTTCTAAAGTTGACAGCATCCAAGGCTAGACCATCTGTTTCAGAAGAAGAGAAGAGAAGACTCTACAATATATATCACCAGTTCCTGGATTCAAAGAGATCTGTTGCTGCCCAGTCAAGGGATACAAAAGGCAAGAAGGCAACTTTAGCTTGA 3381 0.428 MELEVKVVGGIESCFVSLPLSLIQTLQSTRSTPLPQILALELRSPPHTWFVAWSGATSASSAIEVSPQFAECVSLPNHASVKVRAASNVPHASLVTIEPNTEDDWEILELNADLAEAKILNQVRIVHEGMRFPLWLHGHTVITFQVASVYPKNVVVQLMPGTEVAVAPKRRKKSLDSAGDSHLDSSNKEHTFKMLLRLQDPDGLCSASTRVKGVDLHVGLTSVAFVHPETAKKYSFNMLQLVLIVPRVSKEHVNSSKTNIMKNRSASTTNEVENVYTDKTEYRQAIVHLMISEFVAKGHVMIAKSLRLYLRASLHSWVYLKACNIVLEKNIPSTSLFPCHFKLPRQENAVEKDGLEVSHGHNNLIDKKVQAKATSGVFVDTIDWSTQNKVLAAVSDESNYKAEEDATNQSQNQRGLQSLVRLWYITQLKAITSISGMEVSALIMGDKTLLHFEVSCYKFGSNGKVHLAYNPSENSGKAAEMLFLLTFGEEYLHNGKLGAYEVALGGELDNISIVDLKIFERMKLCDPVSILSIEERTSEDHISSNLSSLGWMEKTADDVINRMLILLCSASGLWFGSHNLPLPGHVLIYGPPGSGKTILARTVAKSLENREDILAHIIFISCSKLAFEKVPVIRQELANYVTEALNHAPSIVIFDDLDSIISSPDSEGSQPSISVAGLTDFLVDIMDEYGEKRQNSCGFGPIAFIASIQSLEKIPQSLSSSGRFDFHIKLPAPAASERRAMLKHEIQRRHLQCDDDILLDVAVKCDGYDGYDLEILVDRTVHSAVRRFLPSNASVNVHESPAILREDFSQAMLDFLPVAMRDITKSASDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNVLLYGPPGCGKTHIVGAAATASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWQERLEILAVLSRKLPMDKDIDLATIANMTEGFSGADLQALLSDAQLAAVHDILDNVDAFRPEKTPVITDALLKLTASKARPSVSEEEKRRLYNIYHQFLDSKRSVAAQSRDTKGKKATLA* 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02311 1126 ProSitePatterns AAA-protein family signature. 973 991 IPR003960 GO:0005524|GO:0016887
Lapu3g02311 1126 Gene3D - 90 169 - -
Lapu3g02311 1126 Gene3D - 834 1096 IPR027417 -
Lapu3g02311 1126 FunFam Nuclear valosin-containing protein-like 831 1009 - -
Lapu3g02311 1126 Pfam Peroxisome biogenesis factor 1, N-terminal 95 168 IPR015342 GO:0005524|GO:0005777|GO:0007031
Lapu3g02311 1126 FunFam Peroxisome biogenesis factor 1 90 169 - -
Lapu3g02311 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 835 1101 IPR027417 -
Lapu3g02311 1126 Pfam AAA+ lid domain 1025 1062 IPR041569 -
Lapu3g02311 1126 Gene3D - 734 813 - -
Lapu3g02311 1126 SMART AAA_5 869 1005 IPR003593 GO:0016887
Lapu3g02311 1126 SMART AAA_5 582 734 IPR003593 GO:0016887
Lapu3g02311 1126 SUPERFAMILY Cdc48 domain 2-like 90 168 IPR029067 -
Lapu3g02311 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 563 811 IPR027417 -
Lapu3g02311 1126 Gene3D - 532 733 IPR027417 -
Lapu3g02311 1126 FunFam PeRoXisome assembly factor 1004 1081 - -
Lapu3g02311 1126 PANTHER AAA-FAMILY ATPASE 227 1101 - -
Lapu3g02311 1126 Pfam ATPase family associated with various cellular activities (AAA) 873 1000 IPR003959 GO:0005524|GO:0016887
Lapu3g02311 1126 Pfam ATPase family associated with various cellular activities (AAA) 586 731 IPR003959 GO:0005524|GO:0016887
Lapu3g02311 1126 Gene3D - 1004 1083 - -
Lapu3g02311 1126 CDD RecA-like_PEX1_r2 844 1001 - -
Lapu3g02311 1126 SUPERFAMILY ADC-like 10 85 IPR009010 -
Lapu3g02311 1126 FunFam Peroxisome biogenesis protein 1 539 733 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02311 Lapu-Chr3 44348367 44368311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02311 586 801 Calmodulin-binding Proteins AT3G56690 27.876 4.13e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02311 K13338 - gmx:100803882 1978.37