Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02309 ATGTCTTCTCGCAGATCAAATGGAAGAGTTGCTAGTGGTAGAGTTGCATTAGAAAAGGAAGTCCCATTACCACCTCTGCCTGATTATACAACACATTGGGATGAGGTTAAACCACTTTCAGGAAAACCACACTGGCTAAGTATTCTTGCTCGTTCAAATCTCGGTCCCCGTTATTATATGTGGCCTGCGACCAACTTACGGTTAGAACTTCCTTCTTGTGAGGTCCCCACTATTCTCACCTATCGGGGCAAGAGCTGGGACACGGTGTATTGTGGACAAAACAAGCAACAGGTTTTTAGTGCCGCAGGATGGAAAAAGTTTGCTGTTGAAAATTGTTTGAGGATTGGAGATGCTTGCATTTTTGAGCTCATGGAAAGCAGTGACAAGAAAGTCATCTTCGAGGTTCAAATTCTTAGAGGTGACATCCCATCCCAGATTCTTGAAAATGAAATGATCATGGGTCAGAGTATAGAAAAGCCAATTGTCCTTGACTAG 495 0.4323 MSSRRSNGRVASGRVALEKEVPLPPLPDYTTHWDEVKPLSGKPHWLSILARSNLGPRYYMWPATNLRLELPSCEVPTILTYRGKSWDTVYCGQNKQQVFSAAGWKKFAVENCLRIGDACIFELMESSDKKVIFEVQILRGDIPSQILENEMIMGQSIEKPIVLD* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02309 164 Pfam B3 DNA binding domain 77 133 IPR003340 GO:0003677
Lapu3g02309 164 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 43 143 IPR044837 -
Lapu3g02309 164 Gene3D - 34 141 IPR015300 -
Lapu3g02309 164 ProSiteProfiles B3 DNA-binding domain profile. 77 141 IPR003340 GO:0003677
Lapu3g02309 164 SUPERFAMILY DNA-binding pseudobarrel domain 41 139 IPR015300 -
Lapu3g02309 164 CDD B3_DNA 44 139 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02309 78 135 REM Transcription Factor Family AT4G31680 34.483 2.79e-06 44.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu3g02309 B3 3.2e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02309 - - gmx:100804948 226.483