Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02274 ATGGAGGAGAGGAAGTATGTGTGCAAGTATTGCAGCAAGAGGTTTCCTTGTGGGAAGTCTCTGGGGGGTCACATCAGGACCCATATGACTGAAGAAAGAAGTAATGCTGATGCTGACATGTTCATCAAGTCGGATGGTGTGAAGAAGAAGAGAGATTTATGGTGCGAAGATGTTGTTGGGAACCCCATTTATGGCCTCAGAGAGAACCCCAAGAAAACAATGAGGTTTGTGCATTCTGGTGGTGGTGCCAGTGCCAACTACGAAAAGGAGGAGAGGTTCTGCAAAGAATGCGGGAAAGGTTTCCCATCGCTGAAGGCTCTCTGTGGTCACATGGCTTGTCACTCGGATAAAGAGAAGAGAACCATCAAGTTTGAAGACAGTGACAAGAAACTGAAATTGGTTATGGACAGTCAATCTGACACCGAGACTTGTGCTCCATCTCATCCAAGGAGATCCAAGAGAATGAGGGTGAAGACCATTAACCTTTCCAATCACCCTTTTTCTTCTTCTCCTTCTTCCTCTTCTCTTGTTCCGTTGGCCAATGGATCTTCACCCGTGTCAGAGGTGGAGCAGGAGCAAGAAGAGGTTGCTAGGTGCTTGATGCTGCTGTCTAGAGATTCTAGCTTCAAGGGTCGTTTTTCTTCGGTTACTGAATGTTCTGATAACAACTCAGTTATTCTAGAAGCAAAATCACCCTCTCCTGATACCCGGATTGGTGTCAGCAATGGTTCTAGATATTTCAAACACGGTCCCAAAACCAAAATGGTAGATTCAGATGTCTCAAATGATGAATTTAAGTGGCCTAAAGTGGGAGATAAGTCAAGCAAATACACTGCAACTGTAGTAAAGAAATTAGTGATGGAAGATTTGGATTATGATAGAACAGATGGAACTGCAAGGAGGTTCGATTCAAGAAAGAGAAGCAACTACGACTCTCTTGATCACAATATACTTAGCGGCTCTAGAAAGAAGATAGCAAATGGTTTTGGTAATGAAGTATACGGGAATGGCACAAAAGGTTGGAAGTACGAGTCTCTGGAGGGTGAAAGGGACTATGGTTCTTATGATTCCATAGAGGAGAGCCTTGAAAACAGTTCAGAGACTGAATCTTATCCTGCTCCCAGGTCTCATAACAGTAAGGCTCTCAATGGAAAGAAGTCCACCAGCAAGGCCAAGAAGAAGTTGAAGTCTAAGAAAAGCAGGGATCATGAGTGTCCAATCTGCTACAAAATTTTCAGGTCAGGCCAAGCCTTGGGAGGTCACAAAAGATCCCATTTCATTGGAGGTTCTGAAGAAAACACTCTGGTGATCAAACAAGCAGCTCCTGTTGTTCCGTGCCTGATTGATCTCAATCTACCTGCTCCTGTTGATGAATAG 1377 0.4415 MEERKYVCKYCSKRFPCGKSLGGHIRTHMTEERSNADADMFIKSDGVKKKRDLWCEDVVGNPIYGLRENPKKTMRFVHSGGGASANYEKEERFCKECGKGFPSLKALCGHMACHSDKEKRTIKFEDSDKKLKLVMDSQSDTETCAPSHPRRSKRMRVKTINLSNHPFSSSPSSSSLVPLANGSSPVSEVEQEQEEVARCLMLLSRDSSFKGRFSSVTECSDNNSVILEAKSPSPDTRIGVSNGSRYFKHGPKTKMVDSDVSNDEFKWPKVGDKSSKYTATVVKKLVMEDLDYDRTDGTARRFDSRKRSNYDSLDHNILSGSRKKIANGFGNEVYGNGTKGWKYESLEGERDYGSYDSIEESLENSSETESYPAPRSHNSKALNGKKSTSKAKKKLKSKKSRDHECPICYKIFRSGQALGGHKRSHFIGGSEENTLVIKQAAPVVPCLIDLNLPAPVDE* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02274 458 SUPERFAMILY beta-beta-alpha zinc fingers 2 32 IPR036236 -
Lapu3g02274 458 Pfam C2H2-type zinc finger 403 425 - -
Lapu3g02274 458 Pfam C2H2-type zinc finger 6 30 - -
Lapu3g02274 458 Pfam C2H2-type zinc finger 94 116 - -
Lapu3g02274 458 SUPERFAMILY beta-beta-alpha zinc fingers 93 425 IPR036236 -
Lapu3g02274 458 MobiDBLite consensus disorder prediction 359 385 - -
Lapu3g02274 458 MobiDBLite consensus disorder prediction 163 183 - -
Lapu3g02274 458 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Lapu3g02274 458 MobiDBLite consensus disorder prediction 359 399 - -
Lapu3g02274 458 Gene3D Classic Zinc Finger 1 54 - -
Lapu3g02274 458 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Lapu3g02274 458 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Lapu3g02274 458 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 458 - -
Lapu3g02274 458 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Lapu3g02274 458 ProSitePatterns Zinc finger C2H2 type domain signature. 405 425 IPR013087 -
Lapu3g02274 458 ProSiteProfiles Zinc finger C2H2 type domain profile. 403 425 IPR013087 -
Lapu3g02274 458 SMART c2h2final6 403 425 IPR013087 -
Lapu3g02274 458 SMART c2h2final6 6 28 IPR013087 -
Lapu3g02274 458 SMART c2h2final6 92 114 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02274 Lapu-Chr3 43895776 43897313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02274 1 458 C2H2 Transcription Factor Family AT1G26610 41.118 2.82e-90 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu3g02274 zf-C2H2_6 4.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02274 - - vun:114177115 823.157