Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02269 ATGGCAAACAAGAGAAAAAGATGGGCATGTGAAGGAGGGGAAAAGAAGAGTGAAGAAGGGAACACTGAATGGGAAAAACTAAGGGAAGAGGCAGCATCAATGGCTGCTGCTATACTTGGAGCTAGAAGAGCTAACAAACGTTACATTGGGGTGAGACAAAGACCCTCAGGGCGATGGGTGGCTGAAATCAAAGACACCATACAGAACATTAGACTTTGGTTAGGCACTTACGACATTGCTGAAGATGCTGCAAGAGCTTATGATGAAGCAGCACGTTTGCTTCGTGGTGCCAACACTCGCACAAACTTCTTTCCATCCCAATCCCCTCCTTCTGTTTCTGCTCTTCCTCCAAAGATTGCCAAACTCCTCCTTGTTAGGCTCAAAGCTAGAAACTTTGCCTCTTCATGTAGGTTTACCACTCCCTTTCCGAGTAACCACTATGATCAAGACCCCAAAGTAGAACCTAATCCTGAACCAGAACCTCAATCACAGCCTGACCCAGAACCAGAACCCAAACTTTATCTCCAAATAGAAGAACCCCACTACGGGGATTTTGTAGACATGGTAGGAAATGGGATTGTTGAAGAAAGTTATTATGGTGCTAGTTATAGTTCTTCTGCCATATCTACTTGTGACTATAGCTGTGGAACTAACGAAGAAAATTGTAACCAAAAGGGTACAAGAGAGTTTGAAGGTTGTGATGTTGGGATGGGTGATTTTCAGTTTTTGGACTCTGCTGGATCATTGAGTTACTCTTTCTGTCCATTTGAGATAGCAGAGGAGATGGTGGGACCGATAGAGGAAAACAAATATTATGATGTTGATGATTCACCGTTAGGTAGAGAAACTTTCAGGATGAAGTATGAGCGTAAATTCTCTGCTTGTCTTTACACCTTAACCGGGGTGTCTGAGTGTTTGAGGCTACAAGTTGAACCAGAAAATGGAAAGGAATTGGAATATTTTTGA 966 0.4296 MANKRKRWACEGGEKKSEEGNTEWEKLREEAASMAAAILGARRANKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDIAEDAARAYDEAARLLRGANTRTNFFPSQSPPSVSALPPKIAKLLLVRLKARNFASSCRFTTPFPSNHYDQDPKVEPNPEPEPQSQPDPEPEPKLYLQIEEPHYGDFVDMVGNGIVEESYYGASYSSSAISTCDYSCGTNEENCNQKGTREFEGCDVGMGDFQFLDSAGSLSYSFCPFEIAEEMVGPIEENKYYDVDDSPLGRETFRMKYERKFSACLYTLTGVSECLRLQVEPENGKELEYF* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02269 321 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
Lapu3g02269 321 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Lapu3g02269 321 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Lapu3g02269 321 FunFam ethylene-responsive transcription factor RAP2-11 46 105 - -
Lapu3g02269 321 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
Lapu3g02269 321 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Lapu3g02269 321 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Lapu3g02269 321 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 208 - -
Lapu3g02269 321 MobiDBLite consensus disorder prediction 1 23 - -
Lapu3g02269 321 CDD AP2 46 103 IPR001471 GO:0003700|GO:0006355
Lapu3g02269 321 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Lapu3g02269 321 MobiDBLite consensus disorder prediction 142 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02269 Lapu-Chr3 43853024 43853998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02269 43 123 AP2-EREBP Transcription Factor Family AT5G19790 64.634 3.88e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu3g02269 AP2 7.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02269 K09286 - gmx:100793940 409.068