Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02256 ATGGCAGCAGAAGAAGATGATCAGTTGCAACAAGTCAGATCCAAAGCCACTGAGCTTTTCATCAGGGAAGAATGGAATGCCTCCATCGAAGCCTATTCCCACTTCATCACCCTCTGCACCCAAAAACTCTCCCATTCTCACCCAAACCAAAAGCTTCGCAGATCCCTCTGCATAGCCTTGTGCAACCGTGCAGAAGCCAGGTCCAAGTTGAAGGATTTCCACTGCGCCCTTCAGGACTGTGACCACGCTTTGCAACTCGATGCCACACATTCGAAGACACTTTTGTGTAAAGGTAAGATCTTGCTCTGCCTCAACCGATATGCTTCCGCTCTTGAGTATTTCAGAACCGCCACGCTTGATGGTAACGCTGAAAGCGTAAGTGGGTACTTGGAGAGATGCAAAAGCTTGGAGCTTTTGTCCAAAACGGGGTGTTTGGATCTTTCGGACTGGGTTTCAAATGGGTTCCGAGGGAAGGTTCCAGAACTTGCAGAGCACATTGGTGCCGTGGAGATTAGAAGATCCGAGATCAGTGGGAGAGGATTGTTTGCAATGAAGAATATTGATGCTGGGTCGTTGATCTTGGTCACCAAGGCAATTGCCATGGAAAGGAGTATAATAATGGGAGGGGTTCAGGATCTGAGTGAGGATGCACAGTTGGCAATGTGGAAGAATTTCATTGACAAGGTTTTTGAGTTTGTTGGGAAGTGTCCCAGGACAAGGGGTTTGATAAATAGGTTGTCATGTGGGGAGAATGAGGATCAACTTGAGGTGCCTGATGTGGGTCTCTTTAGCCCTGAGAGTGTGGATAAGGACGGTGAAGTTGAGGTTGTTTGTGATACGGTTAAGTTGGTCGGTATATTGGATGTGAATTCTCTCACTGAGGATGCTGTTTCTGCCAATGTGTTGAGGAGGGGCAATGATTGTTATGGTGTTGGCCTGTGGTTGCTCCCTTCCTTCATAAACCACTCTTGTTGTCCCAATGCAAGGAGGTTGCATGTTGGGGACTACTTGGTGGTTCATGCTTCTAAGGATGTGAAGGCAGGGGAGGAGTTAACTTTTGCTTATTTTGACCCTTTGTGTGGTTTGAGCAAGAGGAAGGAGATGTCTGTGAATTGGGGGATTCATTGCAAGTGCAAGAGGTGTAGGTTTGAGGGGGAAGTGTTCTCCAAACAGGAAGTAAGAGAGATTGAGATTGGTCTAGAGAGAGGGATGGATGTGGGGGGTGTGGTGTTCAAGTTGGAAGAGCAAATGAAGAGGTTGAAGGTTAGGGGGAAGGAGAAAGGGTATTTGAGGGCATCATTTTGGGAAGCATATTCTCAGGCTTATAGGACAGAGAGGGCCATGAAGAGGTGGGGAAGGAGGATTCCTACTGCAGAGGCAGTGGTTGATAGCATCACTGATGTGGTGGGAGGGGATCACAGGTTGCTTAAGTTGCTGATGGAGGAGTTGAAGAAAAATAGTGGTGGAGTTGCAGAGAGGGACAAAGTTTTCAAGATGGCTAGAGAGGTGTTTGGGAAGGTAGTGAAAAAGCAAGCAATGAAGACACTTCTTCAACATTGCATTGGTGATTGA 1572 0.4726 MAAEEDDQLQQVRSKATELFIREEWNASIEAYSHFITLCTQKLSHSHPNQKLRRSLCIALCNRAEARSKLKDFHCALQDCDHALQLDATHSKTLLCKGKILLCLNRYASALEYFRTATLDGNAESVSGYLERCKSLELLSKTGCLDLSDWVSNGFRGKVPELAEHIGAVEIRRSEISGRGLFAMKNIDAGSLILVTKAIAMERSIIMGGVQDLSEDAQLAMWKNFIDKVFEFVGKCPRTRGLINRLSCGENEDQLEVPDVGLFSPESVDKDGEVEVVCDTVKLVGILDVNSLTEDAVSANVLRRGNDCYGVGLWLLPSFINHSCCPNARRLHVGDYLVVHASKDVKAGEELTFAYFDPLCGLSKRKEMSVNWGIHCKCKRCRFEGEVFSKQEVREIEIGLERGMDVGGVVFKLEEQMKRLKVRGKEKGYLRASFWEAYSQAYRTERAMKRWGRRIPTAEAVVDSITDVVGGDHRLLKLLMEELKKNSGGVAERDKVFKMAREVFGKVVKKQAMKTLLQHCIGD* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02256 523 SUPERFAMILY SET domain 169 381 IPR046341 -
Lapu3g02256 523 Gene3D Tetratricopeptide repeat domain 4 141 IPR011990 GO:0005515
Lapu3g02256 523 SMART set_7 167 362 IPR001214 GO:0005515
Lapu3g02256 523 SMART tpr_5 57 90 IPR019734 GO:0005515
Lapu3g02256 523 SMART tpr_5 91 123 IPR019734 GO:0005515
Lapu3g02256 523 Gene3D SET domain 258 385 IPR046341 -
Lapu3g02256 523 SUPERFAMILY TPR-like 13 117 IPR011990 GO:0005515
Lapu3g02256 523 CDD SET_SMYD 302 381 - -
Lapu3g02256 523 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 4 509 - -
Lapu3g02256 523 ProSiteProfiles SET domain profile. 167 356 IPR001214 GO:0005515
Lapu3g02256 523 Pfam SET domain 178 355 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lapu3g02256 SET 1.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02256 - - gmx:100812233 925.62