Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02255 ATGGATGGTAGCACAAGGTCTGAACTCCCACCTGGCTTTAGGTTTCACCCAACGGACGAGGAACTAATCGTGTATTACCTTTGCAACCAAGCCACATCAAAGCCATGGCCTGCTTCTATCATCCCAGAAGTGGATCTCTACAAGTTTGATCCATGGGAATTGCCAGATAAGACAGAATTTGGAGAAAATGAATGGTATTTCTTTAGTCCACGAGACAGGAAGTACCCAAACGGGGTGAGGCCTAACCGAGCAACAGTATCTAGGTATTGGAAGGCCACTGGCACAAACAAGGCAATCTATAGCGGATCTAAGCTTGTTGGGGTGAAGAAATCCTTAGTATTTTACAAGGGTAGGCCACCGAAGGGTGACAAGACTGATTGGATTATGCATGAGTATCGATTGGTTGAATCAAAACAACAAGCTAACAGGAAAATTGGGTCTATGAGGCTGGATGACTGGGTCCTATGCAGGATTTATAAGAAGAAGAACATGGGAAAAGCATTGGAGCACAAAGAGGCACACCTAAAAGTTCAAATGACTAATCTTACAACAGCAAATAATGATGAACAGAAAATGATGATGAACCTTCCCAGAACTTGGTCCCTCACTTACCTTTTGGATATGAACTACTTGGGTCCAATTTTATTTGATGGCTCCTATTGCTCAACCTTTGATTTTCAAATTAGCAATGGCAATATTGGAACAAACCCCTTTGTAAAATCTCAACCGATTGAAATGGCCAACAATTATGTAGCAGACTCAGGGAAGTACTAG 774 0.4225 MDGSTRSELPPGFRFHPTDEELIVYYLCNQATSKPWPASIIPEVDLYKFDPWELPDKTEFGENEWYFFSPRDRKYPNGVRPNRATVSRYWKATGTNKAIYSGSKLVGVKKSLVFYKGRPPKGDKTDWIMHEYRLVESKQQANRKIGSMRLDDWVLCRIYKKKNMGKALEHKEAHLKVQMTNLTTANNDEQKMMMNLPRTWSLTYLLDMNYLGPILFDGSYCSTFDFQISNGNIGTNPFVKSQPIEMANNYVADSGKY* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02255 257 FunFam NAC transcription factor 18 165 - -
Lapu3g02255 257 Gene3D NAC domain 18 166 IPR036093 GO:0003677|GO:0006355
Lapu3g02255 257 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
Lapu3g02255 257 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Lapu3g02255 257 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 181 - -
Lapu3g02255 257 SUPERFAMILY NAC domain 6 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02255 Lapu-Chr3 43681973 43683316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02255 1 214 NAC Transcription Factor Family AT1G69490 66.222 1.28e-106 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu3g02255 NAM 1.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02255 - - gmx:100785110 454.136