Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02253 ATGGGCAGGGTAAAACTAAAGATAAAGAGGTTGGAGAACACCAATGGCCGCCAAGCAACATATGCTAAAAGGAAAAATGGAATTATGAAAAAAGCTGCTGAATTATCTATATTGTGTGATATAGATATCATACTTCTCATGTTTGCACCAAATGGAAAGCCTTCAGTATGTAGGGGGAGACGCAGTAACTTAGAAGAAGTTATTGCGAAGTTTGCTCAACTAACTCCTCAAGAAAGGGCAAAAAGGAAGTTGGAGACTCTTGAGGCACTGAAGAAAACGTTTAAGAAATTAGATCATGATGTAAATATACAAGAATTTCTCGGTACAAGCAGTCAAACTATTGAGGATTTGAGTAATCAAGCCAGGTTATTACAGTCTCAAATTTCTGAAACTCACAAGAGATTAAGTTATTGGTCTGAGTTTGATAAAATAAGCAATGTGGAACAACTAGGACAGATGGAAAATTCACTCAGGGAGTCCCTTAATCAAATTCGAACCCGTAAGGAAAATATAAAAAAGCAGCAACTTGTGTCGCTGCAATGCAATAATCAGTTCAATGAAATGAATATTCCCTTCAGAATGAGTGCAGAGCAGCATCTCCAACCTCTTTCATGGATTACAAATGGTGACAGCCAAAATATAGTTTTACCTGAGGACTCAAGCATGTTTCTTCACAAAGATGTAGAGGGATCTGCGAGTTCATCTTTTGGGAGTTATGCCAGTTATCTTGGCTCAAGTATGAAGAATGAGATGTCTAACTCAGCACAAGAAAATGGGGTCCTTAGTGACATGAACAGTACTGCCAATATGAGACTACAATTGAATGGACAGTTTCCATACCTGCCATACAATTTCAATTTACTGAACAATTTGAAGTTTCAACCAACTGCAGAGATCAATCCACATGAAAATCCTGTAGATTATCATGTGAATGGAAGCTTAGAAGCACCTAGATCTGGTTATGATTCCAATCACCATGGTTGGGCTTCCACATCAGGACCTTGTGGTGTTACTATGTTTGATGAGCAGTTATATGCCCAGGCAAGCTCCACTGAAGTGCACTTTGGCTTCACTTAG 1077 0.3872 MGRVKLKIKRLENTNGRQATYAKRKNGIMKKAAELSILCDIDIILLMFAPNGKPSVCRGRRSNLEEVIAKFAQLTPQERAKRKLETLEALKKTFKKLDHDVNIQEFLGTSSQTIEDLSNQARLLQSQISETHKRLSYWSEFDKISNVEQLGQMENSLRESLNQIRTRKENIKKQQLVSLQCNNQFNEMNIPFRMSAEQHLQPLSWITNGDSQNIVLPEDSSMFLHKDVEGSASSSFGSYASYLGSSMKNEMSNSAQENGVLSDMNSTANMRLQLNGQFPYLPYNFNLLNNLKFQPTAEINPHENPVDYHVNGSLEAPRSGYDSNHHGWASTSGPCGVTMFDEQLYAQASSTEVHFGFT* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02253 358 Coils Coil 77 97 - -
Lapu3g02253 358 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Lapu3g02253 358 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 237 - -
Lapu3g02253 358 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Lapu3g02253 358 CDD MADS 2 56 - -
Lapu3g02253 358 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lapu3g02253 358 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu3g02253 358 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu3g02253 358 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lapu3g02253 358 Coils Coil 114 134 - -
Lapu3g02253 358 Coils Coil 154 174 - -
Lapu3g02253 358 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Lapu3g02253 358 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Lapu3g02253 358 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02253 Lapu-Chr3 43621269 43628365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02253 1 347 Type I MADS-box Gene Family AT2G03060 50.265 5.71e-111 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu3g02253 SRF-TF 1.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02253 - - gmx:100811701 617.461