Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02252 ATGAAGGCGTGGCCTGCTAGTGTCGCATACTCTTCACAAGAAAATACACATAGCCTCACTCGATACGCTTCTTCTTCTTCCTACTCTTCTTCCCCTCCCTCCATGGGAATGGTCTATGCTGACATGGATTCTCTTTCTCTTTGCTCCAACTACGGTGTTGTTTCGTCTCATCAGGATTGTTATGTCTCCAACGGCGGCTCAAACTGGGGTTTGCCCTTTATGAGGGAATGCCTTGGGAGGAACTTTGAGGAACATCCCAACAGTGATGGGGCGGAAGAGGGTAAAGGGTCTGATAGCAGTGATGATGGGGGTGGGGAAGACAGTGACAAAGTTAACCATAATGCTAATAACTTTAACGAAGAGAACCCTAATGAGAATTCTAATAGTGGTTCGGGGCATTCCAAGCTCTGTGCAAGGGGGCATTGGAGACCAGCAGAAGATTCCAAGCTCAAGGAGCTTGTGGCTCTCTATGGCCCTCAGAACTGGAACCTCATAGCCGAAAAGTTAGAAGGGAGATCAGGCAAGAGTTGTAGGCTGAGATGGTTCAACCAGTTGGACCCGAGAATCAATAGGAGAGCGTTCAGTGAAGAAGAGGAAGAGAGACTAATGCAGGCACACAGGATTTATGGCAACAAATGGGCCATGATTGCTAGACTTTTCCCTGGAAGAACAGATAACGCAGTGAAGAATCACTGGCACGTTATAATGGCCAGAAAGTACAGAGAACAGTCTAGTGCCTACAGGAGGAGGAGGCTGAGCCAATCTGTTTACAGGAGAGTGGAGGAAAACACAACAAGCAGCAATGTCTCTAGAGACACAGCCACTGCAGGGATAGAACCACCACCACCCTATTGTCTCAATCTCCCAAACGGAGGACTTGCCAGCAACAATAACATAAGTTCCCCATATGCTGCTGCACCCTTCCATGGAGTAGTTGCTCCTCCTGGTGGGGTTGAGTATGGATTAAATGGCTCACCCCACATGACTGCTTCCAAAGAAGCAATCTCAACCACCAAGCTGGCCCCTCCTCATATTGCCTTGTATCCTCAACAAACACCACTTGATTTCTTTTCAGGTGTTAGAAGCAATGACATGGTAGGAGAGTATTTTGGCCAGAACCATCTCCAACCGTCTGGTTTTTACTCTCATTACCCCCAATATCTGATGCTAATGCAACACCAAAACAATCACAACTTTTACGGTTTCTCAAATTCCACAGCACAGATATTGGGCAGTGAAGCTTCACTATCGTCAGTGGCAGAACACAGAGATCAAGCCATGAGCAGTGACCCCCCAGACGCAATTCCTCCTCCATTTATTGACTTCCTTGGAGTAGGAGCCACATGA 1347 0.4751 MKAWPASVAYSSQENTHSLTRYASSSSYSSSPPSMGMVYADMDSLSLCSNYGVVSSHQDCYVSNGGSNWGLPFMRECLGRNFEEHPNSDGAEEGKGSDSSDDGGGEDSDKVNHNANNFNEENPNENSNSGSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQSVYRRVEENTTSSNVSRDTATAGIEPPPPYCLNLPNGGLASNNNISSPYAAAPFHGVVAPPGGVEYGLNGSPHMTASKEAISTTKLAPPHIALYPQQTPLDFFSGVRSNDMVGEYFGQNHLQPSGFYSHYPQYLMLMQHQNNHNFYGFSNSTAQILGSEASLSSVAEHRDQAMSSDPPDAIPPPFIDFLGVGAT* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02252 448 CDD SANT 193 233 IPR001005 -
Lapu3g02252 448 MobiDBLite consensus disorder prediction 110 134 - -
Lapu3g02252 448 MobiDBLite consensus disorder prediction 82 138 - -
Lapu3g02252 448 Gene3D - 192 265 - -
Lapu3g02252 448 ProSiteProfiles Myb-like domain profile. 186 236 IPR001005 -
Lapu3g02252 448 PANTHER MYB PROTEIN-RELATED 126 273 - -
Lapu3g02252 448 MobiDBLite consensus disorder prediction 82 109 - -
Lapu3g02252 448 MobiDBLite consensus disorder prediction 259 274 - -
Lapu3g02252 448 SUPERFAMILY Homeodomain-like 139 232 IPR009057 -
Lapu3g02252 448 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 139 185 IPR017930 -
Lapu3g02252 448 MobiDBLite consensus disorder prediction 259 282 - -
Lapu3g02252 448 Gene3D - 139 190 - -
Lapu3g02252 448 SMART sant 190 238 IPR001005 -
Lapu3g02252 448 SMART sant 138 187 IPR001005 -
Lapu3g02252 448 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 240 IPR017930 -
Lapu3g02252 448 FunFam MYB transcription factor 192 265 - -
Lapu3g02252 448 Pfam Myb-like DNA-binding domain 191 234 IPR001005 -
Lapu3g02252 448 Pfam Myb-like DNA-binding domain 139 185 IPR001005 -
Lapu3g02252 448 ProSiteProfiles Myb-like domain profile. 139 185 IPR001005 -
Lapu3g02252 448 FunFam MYB transcription factor 139 190 - -
Lapu3g02252 448 CDD SANT 142 183 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02252 Lapu-Chr3 43570281 43572083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02252 29 256 MYB Transcription Factor Family AT1G69560 54.430 1.76e-76 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu3g02252 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02252 K09422 - gmx:100804537 605.905