Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02250 ATGGATCTGCAAAATGTTCAAAATCAAAGCATGCGTTTGGTTCTGTCCACTGATGCCAAACCTAGGCTGAAATGGACTTCTGAGCTTCATCAACGGTTCACTGAGGCTATTAATCAACTTGGAGGTGCAGAAAAGGCAACTCCAAAGAGCCTTATGAGAGTGATGGGGATTCCAGGACTCACTTTGTACCACCTCAAGAGCCATTTACAGCAGAAATATAGGCTTGGGAAAAGCCAACCGCTAGAAACCTGCTCTGACAACAAGCAACAAGGTTACAGTGAAAACCAGAGTAGTGATGGTCATTGCAGCACGGAAATCAGTATTGGGACCCAGAATCAGATGAATGAAAGCTTGAAGATTGCTGAGGCTCTCCAAATGCAAATGGAAGTACAGAGGAAACTTTATGAACAAATTGAGGTCCAAAGACATTTGCAGCTTCGAATTGAGGCTCAGGGGAAGTACTTACAATCAGTACTATCAAAGGCACATGAAACACTTGCAAGATACAATTCTTCCACAACGGGCATAGAACTTGCAAAATCTGAACTTTCTCAGCTAATGTCAATAATTAACAATGCTTGTCCGACCTCTCCCATTTCAGAACTGACAGAAACAAGAGGGCTCAGTTTGAACTGTGGAGAGAGGAAACAAGACAGAGGAACCATGTGCTCACTTGAAAGTTCTTTGACATCATCTGAAAGCTCTGGGAGAACAGAAGAAAGACAACCACTAGATGAGGCAGAGAAGCCTCAAAAGACCCATGTTATTTCAGCTGAATTGCCATTGATGGAGATTCACCCAGAAGGTACAACATTCAAGGGAGATACAAGTGAAGGGAAAAAGAGAAACGCAGCAACTGATTCTAATGGCTGCTGTGTTGATCAGCCTTGTGGAAAAAGATGTGGCAACAAGTTGAGGAAATGTGAACTGTCAGAAATGCTTGACTTGAACAGCCAATATCAGAGAGACATTGACTCAAGTGTGAAAGAAATAGATTTAAATTGCAGTTCAAGCTTTTGGGGACAATAA 1029 0.4227 MDLQNVQNQSMRLVLSTDAKPRLKWTSELHQRFTEAINQLGGAEKATPKSLMRVMGIPGLTLYHLKSHLQQKYRLGKSQPLETCSDNKQQGYSENQSSDGHCSTEISIGTQNQMNESLKIAEALQMQMEVQRKLYEQIEVQRHLQLRIEAQGKYLQSVLSKAHETLARYNSSTTGIELAKSELSQLMSIINNACPTSPISELTETRGLSLNCGERKQDRGTMCSLESSLTSSESSGRTEERQPLDEAEKPQKTHVISAELPLMEIHPEGTTFKGDTSEGKKRNAATDSNGCCVDQPCGKRCGNKLRKCELSEMLDLNSQYQRDIDSSVKEIDLNCSSSFWGQ* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02250 342 Gene3D - 19 78 - -
Lapu3g02250 342 MobiDBLite consensus disorder prediction 222 237 - -
Lapu3g02250 342 Pfam MYB-CC type transfactor, LHEQLE motif 119 165 IPR025756 -
Lapu3g02250 342 SUPERFAMILY Homeodomain-like 19 75 IPR009057 -
Lapu3g02250 342 Coils Coil 121 141 - -
Lapu3g02250 342 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 260 IPR044848 GO:0003700
Lapu3g02250 342 FunFam Two-component response regulator 16 80 - -
Lapu3g02250 342 NCBIfam myb-like DNA-binding domain, SHAQKYF class 20 76 IPR006447 GO:0003677
Lapu3g02250 342 MobiDBLite consensus disorder prediction 221 251 - -
Lapu3g02250 342 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02250 Lapu-Chr3 43502748 43504590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02250 11 301 G2-like Transcription Factor Family AT1G69580 50.331 1.31e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lapu3g02250 Myb_CC_LHEQLE 9.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02250 - - gmx:100805252 520.776