Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02248 ATGAGCGATCATCTGGTGCTGTTCGTGGACCGTCTGGTGCGGCCCGTGCCGGTGGTGGAGCCGCTGGCACAGCATCCGGTCCAGCCCGCCCCCGAGCCCTCAACCCCCGTCGATGAGGCCGCGGCGGGCCCCTCCGGCTCTGCTTCGGCGGCCGAGGACGACAGCGACGACGAGGACGCGCTGCTGCTGCCCTTGGCGGAGTGTCGCATTTGCCAAGAGGAGGATAGCGTCAACAATTTAGAAACCCCCTGCTCCTGCAGCGGTAGTCTTAAGTATGCTCACAGAAAGTGCGTCCAGCATTGGTGTAATGAGAAAGGAGACATAATTTGTGAGATTTGTCACAAGTCGTATGAACCTGGTTATATTGCCCCACCACCTCGTCCTCAGCCTGAAGAAACTACCATTGATATAGGTGGAGGCTGGACAATCTCTGGCATGCCATTGGATTTGCGTGATCCCCGTCTCTTGGCAATTGCAGAGGCAGAACGTCAATTCTTGGAAGCTGAATATGATGGATATGCTGCTTCGAATGCCAGTGGAGCTGCATTTTGTCGTTCAGTTGCTCTGATTTTAATGGCCCTTTTACTTTTGAGGCATGCACTTTCTGTCACGGATGCTGATGCTGAAGATGATCCATCTACTTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCCTGGGCAATCAGTATTTTGCAACGTCGGCGACAGAGACAGGAGGCTGCAGCACTAGCAGCAACCCAAGTTGCTTTTGTTCTACAATCTGAGCAACGTAGGGGTCTGCAGTTTGCCATAGCACCAGGACCAACCATGAACACACACCTGGAACAAGTGTAA 861 0.5273 MSDHLVLFVDRLVRPVPVVEPLAQHPVQPAPEPSTPVDEAAAGPSGSASAAEDDSDDEDALLLPLAECRICQEEDSVNNLETPCSCSGSLKYAHRKCVQHWCNEKGDIICEICHKSYEPGYIAPPPRPQPEETTIDIGGGWTISGMPLDLRDPRLLAIAEAERQFLEAEYDGYAASNASGAAFCRSVALILMALLLLRHALSVTDADAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSEQRRGLQFAIAPGPTMNTHLEQV* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02248 286 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 247 IPR033275 -
Lapu3g02248 286 SUPERFAMILY RING/U-box 67 118 - -
Lapu3g02248 286 ProSiteProfiles Zinc finger RING-CH-type profile. 60 120 IPR011016 GO:0008270
Lapu3g02248 286 CDD RING_CH-C4HC3_MARCH 68 114 - -
Lapu3g02248 286 MobiDBLite consensus disorder prediction 24 57 - -
Lapu3g02248 286 FunFam RING/FYVE/PHD zinc finger protein 56 124 - -
Lapu3g02248 286 SMART ringv_2 67 114 IPR011016 GO:0008270
Lapu3g02248 286 Pfam RING-variant domain 68 113 IPR011016 GO:0008270
Lapu3g02248 286 Coils Coil 156 176 - -
Lapu3g02248 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 121 IPR013083 -
Lapu3g02248 286 Pfam Protein of unknown function (DUF3675) 119 237 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02248 Lapu-Chr3 43470836 43474158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02248 56 114 C3H Transcription Factor Family AT2G37950 43.548 2.07e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02248 - - gmx:100817542 426.017