Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02247 ATGGACCTGACCTCCAGCAGTACCCACACAATACAAACCTTGGATGCAGATATTAAGACCACACCACCCATCAACCCCACCAATAATACCACCCCAAAGTCTCTATCTTTCACCAACGGCACACCCAAGCGCCACCCCACCAGCATCGTTACCACCGCTGCTCCACCGCCGCAACCACCGTCCATGGTGGTTACCTACAAAGAATGCCTCAAAAACCACGCCGCCAGCTTAGGTGGCCATGCACTTGATGGCTGCGGCGAGTTCATGCCTTCCTCCTCCACCAACCCTACCGATCCCCGCTCCCTCAAATGTGCCGCCTGTGGCTGCCACCGCAACTTCCACCGCCGTGATCCTCAAGAACACAGCAATCTCAACAACAACAGCAACATTAACAGCACCATCCCCGCCACTAACAACAATAACCCCACTTTTCTAAGCTGCATCTACACCCCTTCAGCACCAGCACCAATCTCTCAGCGAGCGATGAGCCAAAGCACGAGTCCGAGCCTGAGTTCGAGCCCGAGCCACAGTCCGAGCCCAATGTCAAGCCCCTCACCTCCTCCACTCTCCCACGTGCCACCGTACCACGCTTCAGCACCCCACATGCTTTTAGCCCTCGGCACTGCCTATTCTACTCCCTCCGATGAACATCACCACAACAGAGGCCTCACCTTTTCGAGCGTGATGTTGAAGAGCGAGAACCCGAAGAAAAGGTACAGGACCAAGTTCAGCAAGGAGCAGAAGGAGAAGATGCATAGCTTCTCTGAGAAACTGGGGTGGAGAATGCAGAAAGGGGATGATGGATTGGTCCAGGAATTTTGCAATGATATTGGGGTCTCCAGAGGGGTCTTCAAGGTGTGGATGCACAACAACAAGAACACTTTTAGGAGAAGATTGGATCAAGGGGAAAATGCAAATCCAAACGCAAATACAAACTCTCCTCAAAGTATTGGGGATCATGATGACGGCAATAATACCAGTGGTGGAGGTGGTTTTGACAGTGATATCAACAACCCCTACAACCCAAACAACAACAACATCAACAATGACATTCACATGAATGAAGAAGATGGATGTGCCAAAGTTCATGTTTCTCTTAATGGGCTGTCATCTTAG 1116 0.5125 MDLTSSSTHTIQTLDADIKTTPPINPTNNTTPKSLSFTNGTPKRHPTSIVTTAAPPPQPPSMVVTYKECLKNHAASLGGHALDGCGEFMPSSSTNPTDPRSLKCAACGCHRNFHRRDPQEHSNLNNNSNINSTIPATNNNNPTFLSCIYTPSAPAPISQRAMSQSTSPSLSSSPSHSPSPMSSPSPPPLSHVPPYHASAPHMLLALGTAYSTPSDEHHHNRGLTFSSVMLKSENPKKRYRTKFSKEQKEKMHSFSEKLGWRMQKGDDGLVQEFCNDIGVSRGVFKVWMHNNKNTFRRRLDQGENANPNANTNSPQSIGDHDDGNNTSGGGGFDSDINNPYNPNNNNINNDIHMNEEDGCAKVHVSLNGLSS* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02247 371 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 47 294 - -
Lapu3g02247 371 MobiDBLite consensus disorder prediction 122 136 - -
Lapu3g02247 371 NCBIfam homeobox domain, ZF-HD class 236 293 IPR006455 -
Lapu3g02247 371 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 66 117 IPR006456 -
Lapu3g02247 371 MobiDBLite consensus disorder prediction 116 136 - -
Lapu3g02247 371 MobiDBLite consensus disorder prediction 1 59 - -
Lapu3g02247 371 MobiDBLite consensus disorder prediction 156 196 - -
Lapu3g02247 371 MobiDBLite consensus disorder prediction 179 194 - -
Lapu3g02247 371 MobiDBLite consensus disorder prediction 301 352 - -
Lapu3g02247 371 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 65 117 IPR006456 -
Lapu3g02247 371 MobiDBLite consensus disorder prediction 1 48 - -
Lapu3g02247 371 MobiDBLite consensus disorder prediction 156 178 - -
Lapu3g02247 371 FunFam Zinc-finger homeodomain protein 2 224 297 - -
Lapu3g02247 371 Pfam ZF-HD protein dimerisation region 64 118 IPR006456 -
Lapu3g02247 371 SUPERFAMILY Homeodomain-like 231 297 IPR009057 -
Lapu3g02247 371 Gene3D - 227 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02247 Lapu-Chr3 43438313 43440176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02247 62 295 ZF-HD Transcription Factor Family AT1G69600 48.548 1.16e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lapu3g02247 ZF-HD_dimer 3.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02247 - - vum:124843063 606.29