Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02241 ATGGCACAGCTACCATCTTCATCTTCTTCTTGTTCCACTTGTGAATGGACCCATGACGTGTTCCTCAGTTTCAGAGGCGATGATACTCGAAGTGGCTTCACTGGCAACCTTCACAAGTCTCTTTGTGACAGGGGAATTCTCACCTTCATAGATGATGAGGGGCTTAGAAAAGGGGAAGAGATTAGACCTGCTCTTTTCAAGGCTATTGAGCAGTCCAGAATGGCCATTGTTGTTTTCTCTGAAAATTATGCTGACTCAACTTATTGTCTTGAAGAACTTGCCCTGATCCTTGAGTGCATAATGAAAAAGGGTCGTCTGGTTTGGCCAGTGTTTTACGGGGTTACTCCATCTTATGTGCGGTATCAGATGGGTTCTTATGGGAAAGCATTGGCCAAGCATGGAGAAAGATTCAAGAATGACCAGGAGAAGCTGCAAAAATGGAAGCTGGCTCTACAAGAAGCTGCTGATTTGTCTGGTTCGCATTTCAAACTCAAGCAAGGGTACGAACATGAATTTATTCGAACAATTGTTGAAGAGGTTTCCAAAAAGATAAATCGTATCCCTTTACATGTGGCTAATCGTCCAATTGGACTGGAATCTAGAGTGCATGGGGTGAAATCACTTTTGGATGTTGGATCTAATCGAGGAGTAAGCATGGTTGGGATTTATGGAATCGGGGGAATAGGCAAGACTGCAATCGCATGTGCAGTGTACAATGTCATTGCTGATCAGTTTGAAGGTCAGTGCTTCCTTGGTGATATTAGAGAAAACTCAATGAAGTATGACTTAGTACAACTTCAGAAGACAATACTTTCTGAAATGGTTGGGGAGAAGAGTATCCAGTTGGGGAGTATTAATAGGGGAATGGCAGTATTGAAAAGCAAGCTTCGAAGAAAGAAAGTTCTTTTGGTTCTTGATGATGTTGATAAATTTGAGCAATTAAAGGCCCTTGCTGGTGATCCTTCCTGGTTTGGTGAAGGCAGCAAAATCATTGTCACGACAAGGAATAGACATCTTTTACGTTTACATGGTGTTGAAAGAACATACGAAGCAAAAGGATTAGATGGTAAAGAAGCTCTTGAGTTGTTTAGTTGGCATGCTTTCAAAAGCAATGAAGTTAGTCGAGGTTACATGGATATCTCTAAGCGTGCAGTATTTTATTGCAATGGCCTTCCATTGGCTTTGGAAATAATAGGTTCTAACTTGAATGGTAGAACAATGTCTGAATGGAAAGCAGCATTAGATACCATTGAAAGAAATCCAGATGAAGATATTCACAAAAAACTTGAAGTTAGCTATGATGGTTTGAAGGCAAATGAGAAGGAAGTTTTCCTTGACATTGCTTGTTTCTTTAGAGGCTACCATTTGAAAGATGTCGTAAGTTTGTTGCTCCAAGGTCGTGGTTTCACACCAGAGTATGCTATTAGCATGTTGGTAGATAAATCTCTCATAAAGATCGATCAATATGGTTTTGTGCGAATGCATAACTTGGTAGAGGACATGGGCCGAGAAATTGTCAAGCGACAATCACCATCAGAACCTGGGAAACGCAGTAGATTATGGCTTTATGAAGATATTGTTGATGTTTTAGAAAATGACAAGGGAACTGATAAAATTGAAGTAATCATGCTACACTTGCCAAAGAATAGGGAAGTTCTATGGAATGGAAGTGAGCTCAAGAAGATGACAAACTTAAAAATGCTAGCTATTGAAAATGCTGACTTTTCAAGAGGCCCTGAACATCTCCCAAGTAGTTTGAGAGTACTAAAGTGGCGGGGATATCCTGCACAATCTCTGCCACGTGAATATGATCCAAGGAGACTTGTTATGTTAGACTTGTCTCTAAGTCGCAATATATTGGGAAAACAACTCAACCTCGTGAAGTTCGAGTCTTTGAGTGAAATGGTTTTAAGAGGTTGCAGATTCATAAAACAAGCGCCTGACATGTCTGGAGCCAAAAATTTAAGAAAGCTGTGTCTTGATAACTGCAGGAATTTAGTAGAAGTTCATAATTCCATCGGACTTCTTGACAAACTAACATGGTTCACTGCTATTGGATGCACCAGTCTAAGGACTCTTCCCCATAGCTTCAAGTTAACATCACTTGAATATCTGTCTCTTAGAAAATGCTCAAGCCTCCAGCGTTTGCCAAACATATTACAAGAAATGAAACATATGAAAAAGCTTGACCTGTGTGGAACTGCTATTGAAGAATTGCCATATTCGTTTAGGAAACTCACTGGACTTAAATATTTAGTACTAGACAAGTGCAAGAGGCTTAATCAGATCCCAGTAAATATTTTGATGTTACCAAAACTTGAGAGATTGACAGCTGTAAAATGTGGACAATATGTAAATTTGATCCTTGGTAAAAGTGAAGGACAAGTAAGATTGGTTTCATCCGAGTCTTTGAGAGATTTTAGATTAAGCTACAATGATTTAACACCCACCAGCTTCCCCAATGTAGAATTCTTACTCCTAACTGGCTGTCCTTTCAAAGTCCTTCCTGAATGCATCAGCCAATGTCGCTCTCTAAAGAATCTAGTTTTGGACAACTGCAGGAAGCTTCAAGAAATCACAGGGCTTCCTCCGAAGATAAAATATCTGTCGGCAATAAACTGCACATTATTGTCTCATGAGTCTCAAAACATGTTGTTAAATCAGAGATTACATGAGGGTGGGGGCACAGATTTTTCCCTTCCAGGAACAAGGTTACCAGAATGGTTTGATCATTGTACTAGGGGGCCATCCCTGTCTTTCTGGTTTCGTAACAAATTTCCAAGGATGGCTCTGGCTGTTGTTGGAGTTTTAGACAAGCAAGGCAGTTTTCCTATGTCAAGATTCCACCTGCTCATCAATGGCATTCAAAAGCTGCACTGCCATTTCACTGTGCAAGCAAAACTAATCACATATCATATATTCTTGTCCGATGTGCAACTCAAGTCCTACAATGGTGGATTGGAAAGTGTGTATGGGGAGGATGGGTGGAACCATGTTGAGGTTTCATACGTGAGACCAAAGGCCTTTTCACATTCATGTAGAGCCAAGAAAGGAACCATTAAATGGATGGGAGTTCATGTTTACAAGCAGAAAACAAACATGCAGGATGTCCGGTTCATAAATCCTTGGTGTCCAAAAAGAGCATATAGCGAAGTTTTCAAGCCTGATTTGAAAGAGAGTTTTCAGCCATTGCCCAAAAGAATCCGTGGATCACAACGCAACGAAATTTGTGAGGCACCACATACGAAGCAGCATGAAGCTAACCGTGGTTATCATGGTGTATCAAAGAGGTTATGGTTGGCAATTTGCAGCATTGAAGCTCCTCTAAATGTTAAAGTCCTAATGTGGAATATTTGCCACGATGAATTGCCAACTTTTGAATATCTTTTCAGGAGAAAGCTTGTAATTAGTCCACTCTGCCCCATTTGTGGAATGGAGCCTGAAACCGTTGAACATGTGTTCCTGTTTTGTCCATGGACACGACCCCTTTGGTTTGGAAGTGATTTCCAGTGGTGCGTTGATGCTAAAGAAGTTCAAAGCTTTCAACTTTGGCTTTGGCATAAACTGATGGAGATTCAAAGGGTATATCCAGAAAATGCCAACCAAATATCTGCTCAGGTGGGAATTATTTGTTGGTCTATCTGGAAAGGAAGGAATGAATTTGTTCTTGAAGGCAAACCTGTTGATCCTTTGATTTTAAGGTAG 3705 0.4043 MAQLPSSSSSCSTCEWTHDVFLSFRGDDTRSGFTGNLHKSLCDRGILTFIDDEGLRKGEEIRPALFKAIEQSRMAIVVFSENYADSTYCLEELALILECIMKKGRLVWPVFYGVTPSYVRYQMGSYGKALAKHGERFKNDQEKLQKWKLALQEAADLSGSHFKLKQGYEHEFIRTIVEEVSKKINRIPLHVANRPIGLESRVHGVKSLLDVGSNRGVSMVGIYGIGGIGKTAIACAVYNVIADQFEGQCFLGDIRENSMKYDLVQLQKTILSEMVGEKSIQLGSINRGMAVLKSKLRRKKVLLVLDDVDKFEQLKALAGDPSWFGEGSKIIVTTRNRHLLRLHGVERTYEAKGLDGKEALELFSWHAFKSNEVSRGYMDISKRAVFYCNGLPLALEIIGSNLNGRTMSEWKAALDTIERNPDEDIHKKLEVSYDGLKANEKEVFLDIACFFRGYHLKDVVSLLLQGRGFTPEYAISMLVDKSLIKIDQYGFVRMHNLVEDMGREIVKRQSPSEPGKRSRLWLYEDIVDVLENDKGTDKIEVIMLHLPKNREVLWNGSELKKMTNLKMLAIENADFSRGPEHLPSSLRVLKWRGYPAQSLPREYDPRRLVMLDLSLSRNILGKQLNLVKFESLSEMVLRGCRFIKQAPDMSGAKNLRKLCLDNCRNLVEVHNSIGLLDKLTWFTAIGCTSLRTLPHSFKLTSLEYLSLRKCSSLQRLPNILQEMKHMKKLDLCGTAIEELPYSFRKLTGLKYLVLDKCKRLNQIPVNILMLPKLERLTAVKCGQYVNLILGKSEGQVRLVSSESLRDFRLSYNDLTPTSFPNVEFLLLTGCPFKVLPECISQCRSLKNLVLDNCRKLQEITGLPPKIKYLSAINCTLLSHESQNMLLNQRLHEGGGTDFSLPGTRLPEWFDHCTRGPSLSFWFRNKFPRMALAVVGVLDKQGSFPMSRFHLLINGIQKLHCHFTVQAKLITYHIFLSDVQLKSYNGGLESVYGEDGWNHVEVSYVRPKAFSHSCRAKKGTIKWMGVHVYKQKTNMQDVRFINPWCPKRAYSEVFKPDLKESFQPLPKRIRGSQRNEICEAPHTKQHEANRGYHGVSKRLWLAICSIEAPLNVKVLMWNICHDELPTFEYLFRRKLVISPLCPICGMEPETVEHVFLFCPWTRPLWFGSDFQWCVDAKEVQSFQLWLWHKLMEIQRVYPENANQISAQVGIICWSIWKGRNEFVLEGKPVDPLILR* 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02241 1234 SUPERFAMILY "Winged helix" DNA-binding domain 424 531 IPR036390 -
Lapu3g02241 1234 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
Lapu3g02241 1234 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 766 IPR044974 GO:0006952
Lapu3g02241 1234 PRINTS Disease resistance protein signature 219 234 - -
Lapu3g02241 1234 PRINTS Disease resistance protein signature 295 309 - -
Lapu3g02241 1234 PRINTS Disease resistance protein signature 697 713 - -
Lapu3g02241 1234 PRINTS Disease resistance protein signature 388 402 - -
Lapu3g02241 1234 Gene3D - 181 346 IPR027417 -
Lapu3g02241 1234 Gene3D - 14 180 IPR035897 -
Lapu3g02241 1234 Pfam TIR domain 18 186 IPR000157 GO:0007165
Lapu3g02241 1234 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 186 - -
Lapu3g02241 1234 Gene3D - 353 437 IPR042197 -
Lapu3g02241 1234 SMART till_3 17 157 IPR000157 GO:0007165
Lapu3g02241 1234 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 159 IPR035897 -
Lapu3g02241 1234 Pfam NB-ARC domain 201 434 IPR002182 GO:0043531
Lapu3g02241 1234 Gene3D Ribonuclease Inhibitor 715 914 IPR032675 -
Lapu3g02241 1234 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 447 IPR027417 -
Lapu3g02241 1234 SUPERFAMILY L domain-like 541 883 - -
Lapu3g02241 1234 Gene3D Ribonuclease Inhibitor 540 714 IPR032675 -
Lapu3g02241 1234 Pfam zinc-binding in reverse transcriptase 1099 1164 IPR026960 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02241 Lapu-Chr3 43375467 43380012 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02241 18 781 WRKY Transcription Factor Family AT4G12020 32.570 8.29e-90 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02241 - - var:108319971 2225.28