Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02240 ATGGAAGAGAGAAATGATAATGGCGAGAAACTAGATGAGGTTATGCTACCGGGTTTCAGGTTTCATCCAACTGACGAGGAGCTTGTTGGATTTTACCTGAAGAGAAAGATTCAGCAGAGGCCTCTTTCTATTGAGCTCATAAAGCAGCTTGATATCTATAAGTATGATCCTTGGGATCTTCCAAAGTTGGCCACCACTGGGGAGAAAGAGTGGTATTTCTACTGCCCAAGGGACAGAAAGTACAGGAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGGTTCTGGAAGGCTACAGGCACGGATCGCCCTATATATTCTTCGGAGGGTTCCAAGTGTATTGGTCTGAAGAAATCCCTAGTCTTCTACAAAGGTAGAGCTGCCAAAGGGATGAAAACTGATTGGATGATGCATGAGTTCAGATTACCTTCTCTCACCAACCCATCCTCATCCCCTAAGAAGTTCATGGACAAGACCATTCCTGCTAACGAATCCTGGGCAATCTGCAGAATCTTCAAGAAAACCAATGCTACAGCACAAAGAGCTCTATCTCACTCTTGGGTCTCACCTGAAACCACCACTTTGGATCATATGTTAGCCACTGATAAATATGGCAACCAATTTTCTACAGCAAACATGCCATTGACAAAGAAAACTAGCTTAGCCAGCCAGTTTTGTACTTTTAATCACAATGACACACAACAGTCAACCACTACTAGTAGCACACCTTGTCCTATAGATATTCTAGCTTCGTATAACAAACCTATTATTAATCCATTAATGCTTTACAAGCCCTTAGATCTGTTACCCATTTCAAATGGAGACCTTAGCACTGGCATAATATTCTCATCTCCTCATGAAACTTCAACAAACAGTGCTAAATCTTCGATGGATGTCTCTTCATTGCTATCGAGTACCTCAAGTTCTGTGCTTGGAGAATTTAATAGCAAGACCTCTGAGGGAATGAATACAAACTTTGGTGGGTTACAGGAGCATAGTAACGGCTACCAAATACCACTACTACGTGACATGCAAGGGACCTTTGGCAATCACGATGACAATGTATTGGTAAGGATTCCTAATGTGAATGTGCCTCGTGTAGGTGACCAACAATCGGAGACTGTGCGATCCATTGGGTTTCCATTCAGTAATATGCCGTTCAGTATTGGCGATGCATGGAAGTCAAATGTGCTTTGGGATACTTCATCTTTGTCCTTGTGA 1221 0.4275 MEERNDNGEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLSIELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGMKTDWMMHEFRLPSLTNPSSSPKKFMDKTIPANESWAICRIFKKTNATAQRALSHSWVSPETTTLDHMLATDKYGNQFSTANMPLTKKTSLASQFCTFNHNDTQQSTTTSSTPCPIDILASYNKPIINPLMLYKPLDLLPISNGDLSTGIIFSSPHETSTNSAKSSMDVSSLLSSTSSSVLGEFNSKTSEGMNTNFGGLQEHSNGYQIPLLRDMQGTFGNHDDNVLVRIPNVNVPRVGDQQSETVRSIGFPFSNMPFSIGDAWKSNVLWDTSSLSL* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02240 406 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Lapu3g02240 406 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 272 - -
Lapu3g02240 406 ProSiteProfiles NAC domain profile. 15 174 IPR003441 GO:0003677|GO:0006355
Lapu3g02240 406 FunFam NAC domain-containing protein 35 24 177 - -
Lapu3g02240 406 Gene3D NAC domain 24 179 IPR036093 GO:0003677|GO:0006355
Lapu3g02240 406 SUPERFAMILY NAC domain 14 174 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02240 Lapu-Chr3 43368714 43370712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02240 1 316 NAC Transcription Factor Family AT1G26870 59.215 7.30e-114 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu3g02240 NAM 7.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02240 - - vra:106768003 734.947