Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02226 ATGTTGAAGCTGGAAGAAGACGTCTTTACTTGTGCAATTGCATTTCTCAAGAAAGGCTCATATCTTCTAAAGTACGGGCGAAGAGGGAAGCCGAAGTTCTGCCCATTTAGGCTTTCCAATGACGAGTCTATACTCTTATGGTACTCTGGCAAGGAAGAGAAACAACTTAAGCTCAGTACGGTTTCCAGGATCATTCCAGGGCAGCGAACTGCAACATTTCAGCGGTATCCACGACCTGAAAAGGAATATCAATCATTTTCTCTTATATACAACGATAGGTCCTTGGATTTGATATGCAAGGACAAAGAAGAAGCTGAAATTTGGTTTGTTGGTCTTAAGGCATTAGTTACTCGAGGAAACAATCGCAAGTGGAGATTTGAATCAAGAACTGATGACAGTCAGTGTTCTGATAGTCCAAAATCTGGCACACGAAGATCCACTCCGTCAAATACACCATTTTCTGACCCTGTAGATGCTGGTGGAGCTGCTTTTGATGCACAAAATAGATGGGTTAAGGCTTTCTCTGAAATAATTTCTTACAATGCATCTCACAAGACTTCCAGTCAAGCTGAATCTATTGCAAATTCCTCCTTGTCCTCTGGCTCTGCGGATAACTCAAGCAATCGAAATTCTGCATCTGAGGCAATTCGAGTTAGTTTGTCTAGTGCAGTAAGTTCCTCCAGCCAGGGTTCTTATCATGAAGATTTTGATTCCTTAAGTGATGTTTTTATTTGGGGAGAAGGTATTGGCAATGGAATTCTTGGTGGTGGTGTACACAGAGTTGGAGCCTTATCTAGTTCTGAGATGGATGCATTCCTCCCCAAGGCATTGGAATCAAAGTTAGTTCTAGATGTTCACAGTATTAGTTGTGGCTACAGGCATGCTGTTCTAGTTACCAAGCAGGGAGAGATATTTAGTTGGGGAGAGGAGTCAGGAGGTAGGCTTGGACATGGTGTAGAAATGGATGTTTTTCACCCTAAGCTTGTTGAATCTCTTGGTGGCATGAATATTGAGTTAGTAGCATGTGGAGAATATCATACATGTGCTGTTACTTATTCTGGGGATCTTTATACATGGGGTGATGCTGCTCACAATTCTGGCATGCTTGGACATGGAAATGAAGCCAGTCACTGGATTCCTAAGAAAGTAAGTGGTAACTTGGAGGGTTTACGTGTATCTTATGTGTCCTGTGGACCTTGGCACACAGCTATTGTTACATCAGCTGGGCAATTGTTCACATTTGGTGATGGAACGTTTGGTGCCTTAGGACATGGAAATCAGAGTAGTGCAACTATTCCTCAGGAAGTAGAAACTTTGAGAGGGTTTAGAACAACCAGGGTTGCTTGTGGTGTTTGGCACACTGCTGCAGTTGTTGAGGTGATAAATGAATCTTTGGAATCTTCTACACGCTCATCTAGTGGAAGACTGTTCACCTGGGGTGATGGAGATAAAGGCCAACTTGGACATGCTGATAGGCAACCTAAACTAGTTCCCGAGTGTGTAATTGCATTGAGTACTGAAAACATTTGCCAGGTGGCTTGTGGTCACAGTCTTACTATTATTTTGACAGCATCAGGACGTGTATATACAATGGGAAGCACTGCTTATGGGCAACTTGGCTGTCCGACATCTGATGGGAAAGTCCCTACATGTGTTAAAATTGCTGACAGTTTTGTAGAAGATATTGCCTGTGGTTCATATCATGTTGCAGTCCTGACTTCTAAGGCAGAGGTTTACACATGGGGAAAGGGTTTGAATGGGCAATTAGGTCATGGAGATAATGATCACAGGAATAAACCCACACTTGTTGAGTTTTTAAAAGACAAACAAGTGAAAAGTGTTTTTTGCGGTTCAAACTTTACAGCTGCTGTATGTCTTCATAAATGGATCCCAAGTGTTGATCATTCTACATGTTTTGGGTGTCGTAATCCATTTAATTTCAGAAGAAAACGTCATAATTGTTACAACTGTGGACTTGTGTTTTGCAAATCTTGCACCAGCAAGAAGTCTATAAAAGCTTCCCTCGCTCCCAATACCAATAAGCCGTATCGAGTTTGTGAGGATTGTTATCTTAAACTTAAGAAACCTGCTGAATCAGTACCCTTGGTGCAAACTCCTAGCTTGAGAAGTGTAAGTTTGCAAGAGAATAGAACCACTAAAATACAGGGAACACTATTGAGGTTTACATCTTTTGGTTCTATTCTTCAAACAGAAAGTAGTCAATCGAAGCTTCCAGATTCACAAGATAACCATCGTTTCCCAGCTTCGAATGGAAAATTAGAGATGAGGGGTTTTGTTTCTTCAAAATCATCAAATTCTCTTTTTGTGGATTCTAAGAAACACCTTTCATTTTCTGAGCCTGCTGCAAGAATATCTTGTCAATCAACATCTCCAGTTTCATCAAAGTCAAGTCCAAGACAATCGTATGAAGATATCAATGACGATTTAAAACACAGAAATGATATTTTAAGTCAAGAAGTTATAAGTTTAAGGACTCAGGTTGAAGATCTTACTCGAAAATCAAGAAGTTTAGAGGCTGAGCTTGAGAGAACGTCAAAGCAATTGAAGGAAGTGACTGTAGTAGCTGCAGATGAAGCTGGAAAGTGTAAATCAGCAAAAGAGGTCATAAAATCATTGACTGCACAGTTAAAGGAAATGGTGGAAAGAGTCCCTGAAGGACACAATGCTGACTCCAGTACAGAGCTCTGTGCTGAAACCACTAAAAATATTCTAGATCATTCCTTAGATGTGAGCCATATAAGAAACACTGCCATTCTAAAAAATGAAGGCAGCAGCAATGTAGCAAATCTGATATTACCTAATGGTGCCAAAACACAAAGTGGAAAGGCAGAGTGGGTAGTGCAAGATGAATCAGGTGTGTTCGTAAGTTTGTCCCCACAGCCAGGTGGTGGTAATGAGCTTAAGCGTGTTCGCTTCAGTCGAAAGCATTTCACAGAAGAACAAGCTGAAAAGTGGTGGGCGGAAAACGGAACCAAAATATTGGAGCGGCACAACATAGTTGCTTTATAG 3030 0.4112 MLKLEEDVFTCAIAFLKKGSYLLKYGRRGKPKFCPFRLSNDESILLWYSGKEEKQLKLSTVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKEEAEIWFVGLKALVTRGNNRKWRFESRTDDSQCSDSPKSGTRRSTPSNTPFSDPVDAGGAAFDAQNRWVKAFSEIISYNASHKTSSQAESIANSSLSSGSADNSSNRNSASEAIRVSLSSAVSSSSQGSYHEDFDSLSDVFIWGEGIGNGILGGGVHRVGALSSSEMDAFLPKALESKLVLDVHSISCGYRHAVLVTKQGEIFSWGEESGGRLGHGVEMDVFHPKLVESLGGMNIELVACGEYHTCAVTYSGDLYTWGDAAHNSGMLGHGNEASHWIPKKVSGNLEGLRVSYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGNQSSATIPQEVETLRGFRTTRVACGVWHTAAVVEVINESLESSTRSSSGRLFTWGDGDKGQLGHADRQPKLVPECVIALSTENICQVACGHSLTIILTASGRVYTMGSTAYGQLGCPTSDGKVPTCVKIADSFVEDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDNDHRNKPTLVEFLKDKQVKSVFCGSNFTAAVCLHKWIPSVDHSTCFGCRNPFNFRRKRHNCYNCGLVFCKSCTSKKSIKASLAPNTNKPYRVCEDCYLKLKKPAESVPLVQTPSLRSVSLQENRTTKIQGTLLRFTSFGSILQTESSQSKLPDSQDNHRFPASNGKLEMRGFVSSKSSNSLFVDSKKHLSFSEPAARISCQSTSPVSSKSSPRQSYEDINDDLKHRNDILSQEVISLRTQVEDLTRKSRSLEAELERTSKQLKEVTVVAADEAGKCKSAKEVIKSLTAQLKEMVERVPEGHNADSSTELCAETTKNILDHSLDVSHIRNTAILKNEGSSNVANLILPNGAKTQSGKAEWVVQDESGVFVSLSPQPGGGNELKRVRFSRKHFTEEQAEKWWAENGTKILERHNIVAL* 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02226 1009 Coils Coil 806 861 - -
Lapu3g02226 1009 Pfam Transcription factor regulating root and shoot growth via Pin3 949 1004 IPR013591 -
Lapu3g02226 1009 SUPERFAMILY RCC1/BLIP-II 240 629 IPR009091 -
Lapu3g02226 1009 CDD PH_PLC_plant-like 12 117 - -
Lapu3g02226 1009 CDD FYVE_like_SF 637 690 - -
Lapu3g02226 1009 Gene3D - 365 464 IPR009091 -
Lapu3g02226 1009 Gene3D - 171 364 IPR009091 -
Lapu3g02226 1009 SUPERFAMILY PH domain-like 9 116 - -
Lapu3g02226 1009 MobiDBLite consensus disorder prediction 793 813 - -
Lapu3g02226 1009 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 354 408 IPR000408 -
Lapu3g02226 1009 SMART fyve_4 624 695 IPR000306 GO:0046872
Lapu3g02226 1009 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 635 701 IPR013083 -
Lapu3g02226 1009 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 302 353 IPR000408 -
Lapu3g02226 1009 Gene3D - 10 124 IPR011993 -
Lapu3g02226 1009 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 240 301 IPR000408 -
Lapu3g02226 1009 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 447 457 IPR000408 -
Lapu3g02226 1009 MobiDBLite consensus disorder prediction 127 158 - -
Lapu3g02226 1009 Gene3D - 467 634 IPR009091 -
Lapu3g02226 1009 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 526 575 IPR000408 -
Lapu3g02226 1009 ProSiteProfiles BRX domain profile. 950 1005 IPR013591 -
Lapu3g02226 1009 Coils Coil 869 889 - -
Lapu3g02226 1009 MobiDBLite consensus disorder prediction 793 807 - -
Lapu3g02226 1009 Pfam Pleckstrin homology domain 13 116 IPR001849 -
Lapu3g02226 1009 Pfam Transcription factor BRX N-terminal domain 864 892 IPR027988 -
Lapu3g02226 1009 MobiDBLite consensus disorder prediction 739 754 - -
Lapu3g02226 1009 Pfam Regulator of chromosome condensation (RCC1) repeat 473 521 IPR000408 -
Lapu3g02226 1009 Pfam Regulator of chromosome condensation (RCC1) repeat 302 350 IPR000408 -
Lapu3g02226 1009 Pfam Regulator of chromosome condensation (RCC1) repeat 577 624 IPR000408 -
Lapu3g02226 1009 Pfam Regulator of chromosome condensation (RCC1) repeat 409 457 IPR000408 -
Lapu3g02226 1009 Pfam Regulator of chromosome condensation (RCC1) repeat 525 572 IPR000408 -
Lapu3g02226 1009 Pfam Regulator of chromosome condensation (RCC1) repeat 353 404 IPR000408 -
Lapu3g02226 1009 PRINTS Chromosome condensation regulator RCC1 signature 571 592 IPR000408 -
Lapu3g02226 1009 PRINTS Chromosome condensation regulator RCC1 signature 515 533 IPR000408 -
Lapu3g02226 1009 PRINTS Chromosome condensation regulator RCC1 signature 395 411 IPR000408 -
Lapu3g02226 1009 PRINTS Chromosome condensation regulator RCC1 signature 354 370 IPR000408 -
Lapu3g02226 1009 PRINTS Chromosome condensation regulator RCC1 signature 411 425 IPR000408 -
Lapu3g02226 1009 PRINTS Chromosome condensation regulator RCC1 signature 304 320 IPR000408 -
Lapu3g02226 1009 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 576 627 IPR000408 -
Lapu3g02226 1009 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 288 298 IPR000408 -
Lapu3g02226 1009 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 474 525 IPR000408 -
Lapu3g02226 1009 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 52 884 - -
Lapu3g02226 1009 MobiDBLite consensus disorder prediction 739 758 - -
Lapu3g02226 1009 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 632 694 IPR017455 -
Lapu3g02226 1009 MobiDBLite consensus disorder prediction 135 154 - -
Lapu3g02226 1009 SUPERFAMILY FYVE/PHD zinc finger 628 703 IPR011011 -
Lapu3g02226 1009 FunFam PH, RCC1 and FYVE domains-containing protein 1 211 462 - -
Lapu3g02226 1009 Pfam FYVE zinc finger 628 694 IPR000306 GO:0046872
Lapu3g02226 1009 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 409 460 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02226 Lapu-Chr3 43175649 43189541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02226 866 1006 Major Intrinsic Protein MIP AT1G31880 29.050 2.26e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02226 - - pvu:PHAVU_003G066900g 1565.82