Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02220 ATGGAGATATATATGGTAGAGAAAAGGACAAAAAAGAGCAGTGGCAGGCGTAGACTAGCAATGATGGCTTTCTTCCCAGCAAATTTCATGCTACAAACACCTCACCAAGATGACCACCAACCTCCACCTTCACTCAACTCAATTATAACTTCTTGTGCACCTCAAGAGTACCATGGAGGAGCATCCTTTCTAGGCAAGAGATCTATGTCATTTTCAGGGATTGAACTTGGAGAAGAAGCTAATGCTGAGGAGGATTTATCTGATGACGGATCACAGGCAGGAGAGAAGAAAAGGAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGAAACAAGCTTGAACCTGAGAGGAAAATGCAGCTGGCAAGGGCTCTTGGCTTGCAGCCAAGACAGATTGCTATATGGTTCCAGAACAGAAGGGCTAGGTGGAAGACCAAACAGTTGGAGAAGGACTATGATGTTCTCAAAAGACAATATGAAGCTATCAAGGCAGATAATGATGCACTTCAAGCTCAGAACCAAAAGCTTCAGAGTGAGATATTGGCACTGAAAAGCAGAGAACCCACTGAATCCATCAACCTTAATAAAGAAACTGAGGGCTCCAGCAGCAATAGAAGTGAGAACAGTTCAGAAATCAAGTTGGATATCTCAAGAACCCCAGCTATTGACAGTCCTCTATCCACTCAGCAGAACAGCAGAAACCTCTTTCCATCTTCTACTAGACCAACAGGAGTGGCTCAGCTTTTCCAAACCGCTTCAAGGCCAGACCTTCAGTGCCAAAAGATTGATCATATGGTCAAAGAAGAGAGCTTAAGCAACATGTTTTGTGGCATTGATGATCAATCTGGCCTTTGGCCTTGGTTGGAGCAGCAGCATTTCAATTGA 900 0.44 MEIYMVEKRTKKSSGRRRLAMMAFFPANFMLQTPHQDDHQPPPSLNSIITSCAPQEYHGGASFLGKRSMSFSGIELGEEANAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYEAIKADNDALQAQNQKLQSEILALKSREPTESINLNKETEGSSSNRSENSSEIKLDISRTPAIDSPLSTQQNSRNLFPSSTRPTGVAQLFQTASRPDLQCQKIDHMVKEESLSNMFCGIDDQSGLWPWLEQQHFN* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02220 299 ProSitePatterns 'Homeobox' domain signature. 126 149 IPR017970 GO:0000981|GO:0006355
Lapu3g02220 299 CDD homeodomain 96 152 IPR001356 GO:0003677
Lapu3g02220 299 Gene3D - 88 157 - -
Lapu3g02220 299 MobiDBLite consensus disorder prediction 79 99 - -
Lapu3g02220 299 FunFam Homeobox-leucine zipper protein ATHB-13 88 155 - -
Lapu3g02220 299 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 68 262 IPR045224 GO:0003700
Lapu3g02220 299 SUPERFAMILY Homeodomain-like 89 153 IPR009057 -
Lapu3g02220 299 SMART HOX_1 94 155 IPR001356 GO:0003677
Lapu3g02220 299 PRINTS Lambda-repressor HTH signature 122 131 IPR000047 GO:0003677
Lapu3g02220 299 PRINTS Lambda-repressor HTH signature 131 147 IPR000047 GO:0003677
Lapu3g02220 299 ProSiteProfiles 'Homeobox' domain profile. 91 151 IPR001356 GO:0003677
Lapu3g02220 299 Pfam Homeobox associated leucine zipper 151 191 IPR003106 GO:0006355|GO:0043565
Lapu3g02220 299 Pfam Homeodomain 96 149 IPR001356 GO:0003677
Lapu3g02220 299 MobiDBLite consensus disorder prediction 196 245 - -
Lapu3g02220 299 MobiDBLite consensus disorder prediction 199 245 - -
Lapu3g02220 299 Coils Coil 143 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02220 Lapu-Chr3 42991688 42996439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02220 22 299 Homeobox Transcription Factor Family AT1G69780 62.712 1.16e-117 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu3g02220 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02220 K09338 - gmx:100801479 524.242