Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02219 ATGATGCTGCAAGATATGAAGCAGCACCACATCGAGGAGTCCGAGAAGAAGGAGCACAATGAAGAATCTGAGAAGAAGGAGCACAATGAAGAATCTAAAAAGAAGGAGCACACTGAAGAATCTAAAAAGAAGGAGCGTCACATTGTGACTTGGACACAAGAGGAGGATGATATACTAAGGGAGCAGATTGGTATTCATGGAACTGAAAATTGGGCAATTATTGCATCGAAGTTTAAAGACAAAACGACAAGACAGTGCAGAAGAAGGTGGTACACATACTTGAATTCTGATTTCAAGAAAGGGGGATGGTCAGCTGAGGAAGACATGCTCTTATGTGAGGCTCAAAAAATATATGGTAACAGATGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCTGTAAAAAACCGTTTCTCCACACTCTGCAGAAAGAAAGAAAAATATGCAGCATTAGCAAAAGAGAACAGCACTTCATACATCAATTCAAATAACAAGAGAATTATGTTCCAACATTATAATAATATGGATACAACAGCTGAATCTGGGGTACATATTAAAAAGATGAGGAGGGCCCATATCCCTGATGATGCAGAAAAGATCACATTTGAGGATCGATCACATTTACGAAATGGAACTCCAAATCAACAGCAAAGAGCACCATTTGCAGTATTAGCTCAAAACTCCCATAATTCAAACAACTTGCCAGACCAGCAGCATGTTTGCAATCCCAAGTTTAATTCCGCCCCAGATAACAGGATTCACGGAACATTTCTCAAAAGGGATGATCCAAAGAGAAGTGCATTGGTGCAACAGGCAGAGTTACTAAGTTCACTAGCTCTAAAAGTTGATACGGAAAACATGGACCAAAGTCTTGAACACACTTGGAAGGTTCTTCAAGAGTTTCTGAACCGAAACAAAGAATCAGATATCCCTGGTCACAAGATTCCAGATTTACGGCTTGTGGATAAAGATACTATTAAGGACATGAAGAGCGTTAATGAGGAAAGCCAGGCTTGTTGGAGGCAAGTGGAACGGTACGAAGACTCTCCAGGCAGTTCCGAATACAGTACAGAATCAACTTTCCTGTGTCATTCAGCCGGTGATAATTCAGAGCACCCATTGCATCAGGATATTGGATCCGAAATGAAGTCTGAACAACTTGGAGATAAAAAAGGAGTAGACACAGATGAGAAAAGGGTTCTTTGTACTACAAATGTGGATCAAGATATGTTGCCATATTGTGAGGAACAGATAAGCAATGATGGGATTGTTTCTACCTCATCAAGATTGGAGTTCAGCTCCCCTATTCAAGTAACCCCTCTGTTCAGATCCTTGGCAGCCGGAATTCCCAGCCCACAATTTTCAGAAAGTGAAAGGAACTTCTTAAGGAAAACACTAGGAGTGGAAGAATCTCCATCCATCAACCCAAGTGCCAACTCATCACAACCACCACCCTGCAAAAGAGCCCTGCTACCTAGTCTATAA 1494 0.413 MMLQDMKQHHIEESEKKEHNEESEKKEHNEESKKKEHTEESKKKERHIVTWTQEEDDILREQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSAEEDMLLCEAQKIYGNRWTEIAKVVSGRTDNAVKNRFSTLCRKKEKYAALAKENSTSYINSNNKRIMFQHYNNMDTTAESGVHIKKMRRAHIPDDAEKITFEDRSHLRNGTPNQQQRAPFAVLAQNSHNSNNLPDQQHVCNPKFNSAPDNRIHGTFLKRDDPKRSALVQQAELLSSLALKVDTENMDQSLEHTWKVLQEFLNRNKESDIPGHKIPDLRLVDKDTIKDMKSVNEESQACWRQVERYEDSPGSSEYSTESTFLCHSAGDNSEHPLHQDIGSEMKSEQLGDKKGVDTDEKRVLCTTNVDQDMLPYCEEQISNDGIVSTSSRLEFSSPIQVTPLFRSLAAGIPSPQFSESERNFLRKTLGVEESPSINPSANSSQPPPCKRALLPSL* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02219 497 MobiDBLite consensus disorder prediction 1 47 - -
Lapu3g02219 497 SUPERFAMILY Homeodomain-like 47 141 IPR009057 -
Lapu3g02219 497 CDD SANT 50 94 IPR001005 -
Lapu3g02219 497 CDD SANT 103 144 IPR001005 -
Lapu3g02219 497 FunFam Transcription factor MYB124 43 99 - -
Lapu3g02219 497 PANTHER MYB PROTEIN-RELATED 50 216 - -
Lapu3g02219 497 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 94 IPR017930 -
Lapu3g02219 497 Coils Coil 11 40 - -
Lapu3g02219 497 Gene3D - 102 174 - -
Lapu3g02219 497 MobiDBLite consensus disorder prediction 473 489 - -
Lapu3g02219 497 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 149 IPR017930 -
Lapu3g02219 497 SMART sant 47 96 IPR001005 -
Lapu3g02219 497 SMART sant 99 147 IPR001005 -
Lapu3g02219 497 ProSiteProfiles Myb-like domain profile. 95 145 IPR001005 -
Lapu3g02219 497 Pfam Myb-like DNA-binding domain 51 111 - -
Lapu3g02219 497 MobiDBLite consensus disorder prediction 472 497 - -
Lapu3g02219 497 Gene3D - 38 99 - -
Lapu3g02219 497 ProSiteProfiles Myb-like domain profile. 51 94 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02219 Lapu-Chr3 42940059 42946385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02219 37 344 MYB Transcription Factor Family AT2G02820 58.917 8.65e-127 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu3g02219 Myb_DNA-bind_6 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02219 K09422 - gmx:100807667 677.552