Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02218 ATGGGTAACTGCCTAGGTTCTTCAGCTAAAGTAGAAGCAGCTCACAGTTCCATAACCCCTTCTGGAATTTCAAAGACTAGTCCTTCATCTTTTCCTTCCAACTTATCTATTCAGTCATACTGTGAAGCAAGTGATGTCTCAAGTCTTCCCACACCAAGGTCCGAGGGTGAAATTTTGTCTTCCCCAAATCTTAAGGCGTTTGCCTTTAATGAGCTAAAGAATGCCACCAGAAACTTTCGCCCCGACAGTCTTCTTGGGGAAGGAGGATTTGGTTATGTTTACAAGGGGTGGATTGATGAACACACATTTACAGCTTCAAAACCTGGATCAGGAATGGTAGTTGCTGTTAAGAAACTCAAGCCTGAAGGGTTACAAGGTCATAAAGAGTGGTTGACTGAAGTGGACTACCTTGGGCAACTTCACCATCAGAATCTGGTTAAATTGATTGGTTACTGCGTGGAGGGAGAGAACCGGTTGTTGGTCTACGAGTTTATGTCCAAAGGGAGCTTAGAGAATCATCTATTTAGAAGAGGACCACAGCCTCTATCTTGGTCAGTGAGAATGAAAGTGGCCATTGGTGCTGCCAGAGGACTCTCCTTTCTTCATAATGCCAAGTCTCAAGTCATATATCGTGATTTTAAAGCATCTAATATCCTACTTGACGCTGATTTCAATCCTAAACTCTCTGATTTTGGCTTAGCAAAGGCCGGCCCTACAGGTGATAGAACTCATGTCTCTACTCAAGTTATGGGAACTCAGGGATATGCAGCACCTGAATATGTTGCAACAGGTCGGCTGACGGCTAAAAGTGATGTATACAGTTTTGGTGTTGTGTTGCTTGAGCTATTATCTGGTAGACGTGCCGTTGACAGAACCAAAGCTGGTGTGGAGCAGAATTTAGTAGACTGGACAAAACCTTATTTGGGTGACAAAAGAAAACTATTTCGGATTATGGACACCAAGTTGGGAGGCCAATACCCACAAAAAGGAGCCTTCATGGCTGCCACTCTTGCTCTACAATGCCTAAATCGCGAAGCCAAGGCAAGGCCTCCAATGACAGAGGTTTTAGAAACACTTGAACAGATTGCAGTCTCAAAAACTGTAGGGAGAAACTCCCAACCAGAACAGAAGAGAGTGCATGCTCCTGTAAGAAAGTGTAGAGTGCAAATGGGTGCCCTTTGA 1182 0.4416 MGNCLGSSAKVEAAHSSITPSGISKTSPSSFPSNLSIQSYCEASDVSSLPTPRSEGEILSSPNLKAFAFNELKNATRNFRPDSLLGEGGFGYVYKGWIDEHTFTASKPGSGMVVAVKKLKPEGLQGHKEWLTEVDYLGQLHHQNLVKLIGYCVEGENRLLVYEFMSKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDADFNPKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDRTKAGVEQNLVDWTKPYLGDKRKLFRIMDTKLGGQYPQKGAFMAATLALQCLNREAKARPPMTEVLETLEQIAVSKTVGRNSQPEQKRVHAPVRKCRVQMGAL* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02218 393 ProSiteProfiles Protein kinase domain profile. 79 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g02218 393 SUPERFAMILY Protein kinase-like (PK-like) 53 359 IPR011009 -
Lapu3g02218 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Lapu3g02218 393 Gene3D Phosphorylase Kinase; domain 1 55 164 - -
Lapu3g02218 393 Pfam Protein tyrosine and serine/threonine kinase 83 359 IPR001245 GO:0004672|GO:0006468
Lapu3g02218 393 PANTHER OS01G0588500 PROTEIN-RELATED 43 363 - -
Lapu3g02218 393 FunFam Probable serine/threonine-protein kinase PBL8 165 378 - -
Lapu3g02218 393 FunFam Serine/threonine-protein kinase BIK1 46 164 - -
Lapu3g02218 393 ProSitePatterns Protein kinases ATP-binding region signature. 85 118 IPR017441 GO:0005524
Lapu3g02218 393 Gene3D Transferase(Phosphotransferase) domain 1 165 386 - -
Lapu3g02218 393 CDD STKc_IRAK 85 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02218 Lapu-Chr3 42925312 42928906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02218 55 359 Glycoside Hydrolase AT3G07070 52.597 4.74e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lapu3g02218 PK_Tyr_Ser-Thr 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02218 - - gmx:100305401 729.554