Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02212 ATGCAGGATTATAAGCTTGAAAGGGAAATGCGAGGGGTTGGAGAAGGAGACGATAACTTGAAACTTTCATTGGCAAGGCTTGTAAAGGATTCAACTAGTGATGAAAGTGAACTTGTTTCCCTTTCTCTTGGAATTTCAACTGCAGGTAAACATGAGAAGAAGAATAAAACTGAAAACATCAGAGAAAATGAGGATTTGAAAGAAGGACTTTCACTTGGATTAGATATAAAATTTGATCCTTCAGCTATAAAATATCACAGCAGTGAAACTAGGCGTGATGGAGAAAGGAAAGAAGAGGAACTCAGAGAAATATGGCCACCCAGTAAAGTTCTCAAAACAATGAGAACTTGGGATAAAAATGAAGGTTCTCAACATGTTGAAGTCAAGAAGACTAGGGTTTGTATCAGAGCTAGATGTGATACCCTTACGATGAACGATGGTTGCCAATGGAGAAAATATGGACAGAAAATAGCAAAAGGGAATCCGTGCCCCCGAGCATACTATCGATGCACTGTCTCTCCATCCTGTCCTGTGAAAAAACAGGTTCAAAGATGTGCTGAAGACATGTCGATCTTGATTACCACCTACGAAGGAACTCACAACCACCCTCTTCCTACTTCAGCCACTACCATAGCCTACACAACTTCAGCTGCTGCTTCCATGCTTCAGTCTCCCTCATCCACCACACAACTAGGACTAGCCAATTCAGATACTGTCCCTCTCATCAATTCTAGTGTTTCTTATAACCTTAATGCCCTAAACATCACATCAAGCTATCACCACGTTTTAAAACCACCACACTTATACTTCCACGGCTCATCTATTTCTACCTCTAATTCTCACCCCACAGTCACTCTTGATCTTGCCACTTCTCAAGCTTCACCTCACACTGGAAAATTCACCCCAACCTTGTCTTTCATACCAAAATCAAGCAATGTTGATTTTTCCTCAACTACTTTCTCTCCTTTGCAGTCTAGTATGGTACACTCACCTTTTTATGGTCATTACTTCAACTATGAGGGATTGATCACCCCAAATAGAAACCATATAGGTTCCCTTGTGAACACTGGAAAACAACCATTCCAGGGGCATCTGTGTCAACCTAATCACATTAGCAACCATGCCATTTCTAAACAACCTTTGTCTGATTCCATTGTATCTGCAGCCAAGGCAATCACTGCTACCCCAAAATTTCAATCTGCAATATTAGCAGCTGCCCTCACAGCATATGCTGGTAATGGGGTAAGCGAAAATCTAATGCATCAAGGTACAAGAGAGTGTCCTTTTCTGCTCCTAGTGAACAGAAAAAAGACTCAGTCATATTTCAGCCATCACATGCATCTAAAAGTTCCTTTGGATCGTCTTCTAGTAAAAGTAACCTATTCTTAG 1389 0.4096 MQDYKLEREMRGVGEGDDNLKLSLARLVKDSTSDESELVSLSLGISTAGKHEKKNKTENIRENEDLKEGLSLGLDIKFDPSAIKYHSSETRRDGERKEEELREIWPPSKVLKTMRTWDKNEGSQHVEVKKTRVCIRARCDTLTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVSPSCPVKKQVQRCAEDMSILITTYEGTHNHPLPTSATTIAYTTSAAASMLQSPSSTTQLGLANSDTVPLINSSVSYNLNALNITSSYHHVLKPPHLYFHGSSISTSNSHPTVTLDLATSQASPHTGKFTPTLSFIPKSSNVDFSSTTFSPLQSSMVHSPFYGHYFNYEGLITPNRNHIGSLVNTGKQPFQGHLCQPNHISNHAISKQPLSDSIVSAAKAITATPKFQSAILAAALTAYAGNGVSENLMHQGTRECPFLLLVNRKKTQSYFSHHMHLKVPLDRLLVKVTYS* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02212 462 ProSiteProfiles WRKY domain profile. 139 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu3g02212 462 FunFam probable WRKY transcription factor 31 129 206 - -
Lapu3g02212 462 Pfam WRKY DNA -binding domain 145 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu3g02212 462 SUPERFAMILY WRKY DNA-binding domain 138 205 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu3g02212 462 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 6 413 IPR044810 GO:0003700
Lapu3g02212 462 Gene3D WRKY domain 129 206 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu3g02212 462 SMART WRKY_cls 144 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02212 Lapu-Chr3 42831143 42833089 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02212 60 292 WRKY Transcription Factor Family AT5G15130 49.793 8.91e-56 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu3g02212 WRKY 2.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02212 - - vum:124844927 660.988