Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02211 ATGTCCAACCTGCAGTTTCAACTACACTCTCCACCATCACTCTTATCATCTTTATCTTCATTATCGTCTTCTTCTCTTAAGCTATTCCCAAACCGCTCTTTCTCCTCAAAGTCCCTTCCTTTCAACACTCCTAAACCCTTCTTCCTCAGATGTCGCCACTCTGACCTCTTCGACCAGAACACCTTAGCCTTCTCACAAAGACCCACAGCTCCCACTGCTTCAGTTGGAGCTTTGCCGCCTAGGGTTTATGTTGGTTACTCCATTTACAAAGGGAAGGCTGCGCTTACTTTGACTCCTAGGCCACCGGAATTCGTGCCGCTCGATTCAGGGGCATATAAAATATCCAAGGAAGGTTATGTGCTGCTTCAGTTTGCACCTGCGGTTGGTACGCGCCAGTATGATTGGAATAGGAAGCAGGTGTTTTCCTTATCAGTGGGTGAAATGGGAAGTCTGATAAGCCTTGGTACAAGGGAGTCCTGTGAGTTTTTTCACGATCCTTTTAAGGGCAAAAGTGATGAAGGAAAAGTCAGAAAGATTTTGAAGTTGGAGCCTCTTCCAGATGGTTCTGGGCACTTCTTTAACCTAAGTGTTCAAAACAAGCTTGTGAACGTGGATGAAAACATCTATATTCCTGTTACAAAAGCAGAGTTAGCAGTTTTGAACTCGACTTTCAATTTTATCATGCCATACCTTCTAGGTTGGCATACCTTTGCAAACTCTATAAAGCCAGAAGATACTAGTGGAGTGAATAATGCCAACCCAAGATATGGAGGAGACTATGAATGGAACAAATAG 795 0.439 MSNLQFQLHSPPSLLSSLSSLSSSSLKLFPNRSFSSKSLPFNTPKPFFLRCRHSDLFDQNTLAFSQRPTAPTASVGALPPRVYVGYSIYKGKAALTLTPRPPEFVPLDSGAYKISKEGYVLLQFAPAVGTRQYDWNRKQVFSLSVGEMGSLISLGTRESCEFFHDPFKGKSDEGKVRKILKLEPLPDGSGHFFNLSVQNKLVNVDENIYIPVTKAELAVLNSTFNFIMPYLLGWHTFANSIKPEDTSGVNNANPRYGGDYEWNK* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02211 264 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 73 248 - -
Lapu3g02211 264 Pfam Whirly transcription factor 88 222 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lapu3g02211 264 SUPERFAMILY ssDNA-binding transcriptional regulator domain 80 263 IPR009044 GO:0003677|GO:0006355
Lapu3g02211 264 Gene3D Transcriptional Coactivator Pc4; Chain A 76 252 IPR009044 GO:0003677|GO:0006355
Lapu3g02211 264 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 56 264 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02211 Lapu-Chr3 42813096 42816433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02211 8 264 Whirly Transcription Factor Family AT1G14410 64.591 2.69e-118 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Lapu3g02211 Whirly 8.1e-61 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02211 K26559 - gmx:100789252 448.743