Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02210 ATGAAGATTATTCACCAGGATCCCAAGCTTCAGGCACAGCGCGTGGCGGCTATTAAGAAAGCGAAGGGAACTGTTGCAGCAAGAAGGCACACTTCCAAAACTATGAAAGCTTACTTTAGTGATCCAATAAACCGACAGAAAAGGAGCATGGCCATGAAGGGAGTAAAATTCTACTGCCAAAACTGTGGACGTGAAGGGCATAGGAGACACTACTGTCCAGAACTCAAGGATACCTTGATTGATCGGCGATTCACTTGTAGGGTCTGTGGGGAAAAAGGCCACAACAGAAGAACATGTAGAAAGGTAAGGGTAAGGCATAGCAATGGGAGAATGATGAAGCACCATCAGTGTAAGGTCTGTGGGGAAGAAGGCCACAACAGAAGAACATGTAGAAAGTTAAGTATAAGCAGTAGCAAGGGGAGAATGATAAAACACCGTAAGTGTAAAGTATGTCACCAATTCGGCCATAACCGCAGGACTTGTCCTGAAGTTGTTCCTAGTAAAAGAAACACGGCCTCTCGAAGACCATACAAGTGTAGATTGTGCAAGAAAAAGGGACATAATAGTAGGACATGTCCTAGGAAGACAGTTGTTACTGAACATCCTCAAGATTAA 615 0.4407 MKIIHQDPKLQAQRVAAIKKAKGTVAARRHTSKTMKAYFSDPINRQKRSMAMKGVKFYCQNCGREGHRRHYCPELKDTLIDRRFTCRVCGEKGHNRRTCRKVRVRHSNGRMMKHHQCKVCGEEGHNRRTCRKLSISSSKGRMIKHRKCKVCHQFGHNRRTCPEVVPSKRNTASRRPYKCRLCKKKGHNSRTCPRKTVVTEHPQD* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02210 204 ProSiteProfiles Zinc finger CCHC-type profile. 86 101 IPR001878 GO:0003676|GO:0008270
Lapu3g02210 204 SMART c2hcfinal6 116 132 IPR001878 GO:0003676|GO:0008270
Lapu3g02210 204 SMART c2hcfinal6 58 74 IPR001878 GO:0003676|GO:0008270
Lapu3g02210 204 SMART c2hcfinal6 178 194 IPR001878 GO:0003676|GO:0008270
Lapu3g02210 204 SMART c2hcfinal6 85 101 IPR001878 GO:0003676|GO:0008270
Lapu3g02210 204 SMART c2hcfinal6 147 163 IPR001878 GO:0003676|GO:0008270
Lapu3g02210 204 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 2 100 - -
Lapu3g02210 204 SUPERFAMILY Retrovirus zinc finger-like domains 56 102 IPR036875 GO:0003676|GO:0008270
Lapu3g02210 204 Gene3D - 142 203 - -
Lapu3g02210 204 SUPERFAMILY Retrovirus zinc finger-like domains 140 195 IPR036875 GO:0003676|GO:0008270
Lapu3g02210 204 Gene3D - 53 103 - -
Lapu3g02210 204 MobiDBLite consensus disorder prediction 185 204 - -
Lapu3g02210 204 SUPERFAMILY Retrovirus zinc finger-like domains 108 163 IPR036875 GO:0003676|GO:0008270
Lapu3g02210 204 ProSiteProfiles Zinc finger CCHC-type profile. 59 74 IPR001878 GO:0003676|GO:0008270
Lapu3g02210 204 ProSiteProfiles Zinc finger CCHC-type profile. 117 132 IPR001878 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02210 1 162 C2H2 Transcription Factor Family AT5G20220 57.895 2.50e-61 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02210 - - var:108323927 387.497