Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02199 ATGTCTTGTGAGATGCTTAATGGGGGTTCAAGCATGACGCTTCTACTCCAAAAAGAAAGGCTTCCATGCTCCCCTGATCCTATCCAAACCTTTTGGGTTCAGAACTCTGAACCTTCTTTCCAAGGCTCAAATTCCTTGGTTAATGTTGTGAATGTGACGGATAGGCCCTTCTTCCGAGGGGTTGAGAAAGAAGAGAACGATGATGATGATGAGGATTTTGAGGTATTGCCCCATCAACCCGGTAAGAAAAGGAGGCTCACAAGGGAACAAGTTCAGTTCCTTGAAAGTAACTTCGAGGTGGAAAACAAGCTTGAACCCGAAAGGAAAGTCCAACTTGCAAAGGAACTTGGCATGCAACCAAGGCAAGTGGCTATATGGTTCCAAAATCGTAGGGCAAGGTTCAAGACCAAACAGCTAGAAAACGACTATGGCCTGTTGAAAGCTAGCTATGACATTCTCAAAAGGGACTATGACAATCTCGTTCAAGAGAATGACAAGTTGAAGGAAGAGGTTTATTCTCTGATGAAGAAAGTGATTCCCAGAGAGAAAGAGGAACAGAATTTGGATGATACCAGCTGTGATGCTGTCAACTCAGAGCATAAAGAGCAGAAGGATTTGATCATAAATAGAGGTTCTGAAAATGGATCCAAAGTGGCACTTCCTGTTATGGTAATAAGTAAACAGAAAGATGCTAATTCAGCTAAAAGTGATGTGCTTGATTCGGATAGCCCACATTTAACTGATGGAAACCAATCTTCAGTCTTGGAGCCTGCAGATTCCTCTCATGCTTTGGAACCAGACCACTCGGATTTCTCACAAGATGAGGAAGACATCCTCAGCCAAAACATCTTGACCATGCCATTCCTACCAAAGTTTGAGGTCGAATATGTCTGCTATGATGAACCACCTGAAAATCCTTGCACGTATCATCAGTTTTCCACCATTGATGATCTGCCATTGCTAATGCTGATCAATATGAAGTTCTTCGACCCAATAAGCTGCAACAATACAGAACAT 1017 0.4267 MSCEMLNGGSSMTLLLQKERLPCSPDPIQTFWVQNSEPSFQGSNSLVNVVNVTDRPFFRGVEKEENDDDDEDFEVLPHQPGKKRRLTREQVQFLESNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQLENDYGLLKASYDILKRDYDNLVQENDKLKEEVYSLMKKVIPREKEEQNLDDTSCDAVNSEHKEQKDLIINRGSENGSKVALPVMVISKQKDANSAKSDVLDSDSPHLTDGNQSSVLEPADSSHALEPDHSDFSQDEEDILSQNILTMPFLPKFEVEYVCYDEPPENPCTYHQFSTIDDLPLLMLINMKFFDPISCNNTEH 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02199 339 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
Lapu3g02199 339 CDD homeodomain 80 138 IPR001356 GO:0003677
Lapu3g02199 339 MobiDBLite consensus disorder prediction 231 258 - -
Lapu3g02199 339 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
Lapu3g02199 339 SUPERFAMILY Homeodomain-like 73 139 IPR009057 -
Lapu3g02199 339 Pfam Homeobox associated leucine zipper 137 177 IPR003106 GO:0006355|GO:0043565
Lapu3g02199 339 MobiDBLite consensus disorder prediction 231 274 - -
Lapu3g02199 339 Coils Coil 150 177 - -
Lapu3g02199 339 Gene3D - 77 142 - -
Lapu3g02199 339 SMART HOX_1 79 141 IPR001356 GO:0003677
Lapu3g02199 339 Pfam Homeodomain 82 135 IPR001356 GO:0003677
Lapu3g02199 339 FunFam homeobox-leucine zipper protein ATHB-6-like 85 131 - -
Lapu3g02199 339 PRINTS Lambda-repressor HTH signature 108 117 IPR000047 GO:0003677
Lapu3g02199 339 PRINTS Lambda-repressor HTH signature 117 133 IPR000047 GO:0003677
Lapu3g02199 339 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 70 226 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02199 Lapu-Chr3 42610846 42615587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02199 31 178 Homeobox Transcription Factor Family AT3G01470 55.629 2.09e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu3g02199 Homeodomain 1.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02199 K09338 - gmx:100804328 472.241