Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02192 ATGGGTGCAGGGGACTACTACAAGATCCTCAAGGTGAACCGCAATGCCACGGATGAAGAACTCAAGCGGGCATATAAGAGGTTGGCCATGAAGTGGCACCCAGACAAGAACCATCAGCACCACCCTGTTACGAAAGAAGAAGCTGAGGCTAAGTTCAAGCAGGTTTCGGAGGCTTATGATGTTCTCAGCGACCCCAAGAAGCGCCAGATCTATGATTTTTATGGCCATTACCCCTTGAATTCTATGAAGATGAAGGAGGAGAAGGGTGATGGTGATGTTAGGGTCCCCAAGAGCGATAAAGTTGGGGTGGTTGAGAGAAAATTGGTCTGCACCCTTGAGGAACTTTACAAAGGTTGCAAAAAGAAGTTGAAGATCTCAAGGACTGTTCATTATGAATTCGGTAAGTTGAAGACAGTGGAAGAGGTCTTGAGAATAGATATCAAACCTGGTTGGAAGAAAGGCACAAAAATAACATTTCCTGGGAAAGGCAACCAAGAAGCAGAAGCCAGTGCTCCTGATGATCTAGTCTTTGTGGTGGATGAGAAACCACATGCTTTATTCAAGAGGGATGGAAATGATTTGGTTGTCACACAAAAAATCTTACTTGTAGAGGCTCTAGTGGGAAAGACTCTTAACTTAACAACCTTGGATGGAAGAGAGCTCACAATTCAAGTGAAAGATGTTGTGAAACCAAAATTTGTGTTGGTGGTCCCAAATGAAGGAATGTCCATCTCTAAGGAACCTGGAAAGAAAGGAAACTTGAGAATCAAGTTTGATGTTATGTTCCCATCAAGGCTTACCACACATCAGAAATATGAGCTGAAAAGGATTTTGAGCAACACTGAAGACTAA 852 0.4319 MGAGDYYKILKVNRNATDEELKRAYKRLAMKWHPDKNHQHHPVTKEEAEAKFKQVSEAYDVLSDPKKRQIYDFYGHYPLNSMKMKEEKGDGDVRVPKSDKVGVVERKLVCTLEELYKGCKKKLKISRTVHYEFGKLKTVEEVLRIDIKPGWKKGTKITFPGKGNQEAEASAPDDLVFVVDEKPHALFKRDGNDLVVTQKILLVEALVGKTLNLTTLDGRELTIQVKDVVKPKFVLVVPNEGMSISKEPGKKGNLRIKFDVMFPSRLTTHQKYELKRILSNTED* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02192 283 SUPERFAMILY HSP40/DnaJ peptide-binding domain 187 271 IPR008971 GO:0006457|GO:0051082
Lapu3g02192 283 FunFam DnaJ-like subfamily B member 13 2 97 - -
Lapu3g02192 283 CDD DnaJ_C 104 266 - -
Lapu3g02192 283 Gene3D - 184 264 - -
Lapu3g02192 283 SUPERFAMILY Chaperone J-domain 4 80 IPR036869 -
Lapu3g02192 283 FunFam Dnaj homolog subfamily b member 100 182 - -
Lapu3g02192 283 CDD DnaJ 5 64 IPR001623 -
Lapu3g02192 283 PRINTS DnaJ domain signature 25 40 IPR001623 -
Lapu3g02192 283 PRINTS DnaJ domain signature 7 25 IPR001623 -
Lapu3g02192 283 PRINTS DnaJ domain signature 47 67 IPR001623 -
Lapu3g02192 283 PRINTS DnaJ domain signature 67 86 IPR001623 -
Lapu3g02192 283 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Lapu3g02192 283 SMART dnaj_3 4 67 IPR001623 -
Lapu3g02192 283 ProSiteProfiles dnaJ domain profile. 5 75 IPR001623 -
Lapu3g02192 283 FunFam DNAJ heat shock family protein 183 278 - -
Lapu3g02192 283 Pfam DnaJ domain 5 72 IPR001623 -
Lapu3g02192 283 Gene3D DnaJ domain 2 95 IPR036869 -
Lapu3g02192 283 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 278 - -
Lapu3g02192 283 SUPERFAMILY HSP40/DnaJ peptide-binding domain 106 184 IPR008971 GO:0006457|GO:0051082
Lapu3g02192 283 Gene3D - 102 182 - -
Lapu3g02192 283 Pfam DnaJ C terminal domain 105 263 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02192 Lapu-Chr3 42514016 42516425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02192 6 74 C2H2 Transcription Factor Family AT1G74250 37.681 2.66e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02192 K09510 - gmx:100786068 508.064