Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02180 ATGGATCCGGGTGCGATGATGAACGAGGGTTCCTTTGCGAATAATGGGAGCGGCAATACGGCGCCGTATAGCTTGGCGGAGATCTGGCAGTTTCCGCAAGCGATTAATGGCGGCGGAGGATTGGGTCTCCGGAGCCCGCAGTTCGGACACGGGCCGGGGCAGTTTGGGGATTTCACTCCCGGGCCCAACAATGGGCTTGGGCCCAGTAACAGCAGAAAGCGGCGCGACTCCGAGGACGATTCCGCTAAGGCCGTTTCCACCAGCAATGCCGTGAATGAGGGTGATGGAAAACGTGTTAAAGCAACGGGGAATGGTGATGGTAAAGGTGAAGAAGTCAGTTCAGGAAAGCCTGCGGAGCAAAGCGCAAAGCCTCCTTCGGAAGCTCCCAAGCAAGATTATATTCACGTCCGAGCCAGAAGGGGTCAAGCCACTGATAGCCACAGTCTTGCAGAACGAGCTCGAAGGGAAAAAATTAGTGAAAGGATGAAAATTCTTCAGGATTTGGTCCCTGGTTGTAATAAGGTTATCGGGAAAGCATTGGTCCTTGATGAGATAATTAATTATATCCAATCTCTTCAGCGCCAAGTTGAGTTTTTGTCAATGAAACTTGAAGCAGTGAATTCGAGACTGAACTCCGGTATTGAAGCCTTTCCTCCTAAGGATTTCGGTCAGCAAGCATTTGATCCCGCGGGCATACCGTTCGGTTCACAAGCTCCAAGAGAGTACAGCAGAGGTTCTTCACCTGAATGGTTACATATGCAGGTAGGAGGTGGCTTTGAAAGAACAACGTAG 792 0.5088 MDPGAMMNEGSFANNGSGNTAPYSLAEIWQFPQAINGGGGLGLRSPQFGHGPGQFGDFTPGPNNGLGPSNSRKRRDSEDDSAKAVSTSNAVNEGDGKRVKATGNGDGKGEEVSSGKPAEQSAKPPSEAPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNSGIEAFPPKDFGQQAFDPAGIPFGSQAPREYSRGSSPEWLHMQVGGGFERTT* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02180 263 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 71 233 IPR024097 GO:0006355
Lapu3g02180 263 SMART finulus 148 198 IPR011598 GO:0046983
Lapu3g02180 263 MobiDBLite consensus disorder prediction 1 22 - -
Lapu3g02180 263 MobiDBLite consensus disorder prediction 34 131 - -
Lapu3g02180 263 FunFam Basic helix-loop-helix transcription factor 139 211 - -
Lapu3g02180 263 CDD bHLH_AtBPE_like 132 217 - -
Lapu3g02180 263 Gene3D - 139 215 IPR036638 GO:0046983
Lapu3g02180 263 Coils Coil 189 209 - -
Lapu3g02180 263 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 192 IPR011598 GO:0046983
Lapu3g02180 263 Pfam Helix-loop-helix DNA-binding domain 146 193 IPR011598 GO:0046983
Lapu3g02180 263 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 209 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02180 Lapu-Chr3 42367064 42369641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02180 1 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 61.017 3.43e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g02180 HLH 2.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02180 - - gmx:100784478 475.322