Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02178 ATGATTGTGGGCAGAGTAAAGTGTAACACAGTAACTAACACACCACACATGTCGCCGGCAACAGACGTAATATCGGCGACGCCGGGGGCGTTCCGGCTACGGTGGGACGTGTTCCTGAGCTTCAGAGGCGCCGATACGCGGGGCGCTATCACGAAAGGTTTGTACGAGTGTCTGCAGGCGCGTGGGGTTCGCGTGTTCCTGGACGACGTGGGATTGGAGCGTGGGGAAGAGATAGCGAAGGGGCTGATGGAGGGCATTGATGACTCTGCAGCGTTCATTGTCATCATATCTGAAAACTACGCTTCTTCACATTGGTGTCTTGAGGAACTCGCTAAGATTTGCGACACCCGCAGGCTCCTCTTACCCGTTTTCTACCGGGTCGATCCGTCGGATGTCCGACACCAATCGGGTCCCTTCGGAAAGGGTTTCGAATCGCATGAAAAAAGGTTTAAGGAAAATGAGGTTTCAAAGTGGAGGGAAGCTTTGAAGAAAGTTGGTGGAGTTGCTGGTTGGGTTTTTAATCACAGTGAGGAAGATGATCTGATTCGGCGTTTGGTGACAAGGGTGTTGAAAGAGTTGAGTAATACTCCTTTGGGTGTGCCTGAGTTTGCAGTGGGGCTTGATAAACGTGTTGGGAAGGTGATGGAGTTGTTACAAGTTCAATCCAACGGTGTCAAGGTTTTGGGGTTGTATGGGATGGGTGGGGTTGGTAAGACAACCCTGGCCAAAGCACTTTTCAATGCCCTTGTTAACCGTTTTGAGCACCGTTGCTTCATTTCCAATGTCAGACAAGTTTCATCAAAACATGATGGTTTGGTTTCCCTTCAAAGCAAAATCATCAAAGACCTTTTTCTTGGAGCAGGGTCTCCCTCCATCAGTGATGTCAATGTTGGTATTTTTGCTATCAAAAGGATAGTTAGTGAGAATCGAGTTTTACTAGTCTTGGATGATGTTGATGACGTGAAGCAGCTTGATGTTTTGATTGGTAAGAGGGAATGGTTTTATGATGGAAGCTGTGTGATAATCACAACAAGGGATACACAAGTTCTAACTCAGAGTCATGTGAATGAGTTGTATGAAGTCAGGGAGTTGGATGATTCTCAAGCTCTAGAGTTGTTCAGTTACCATGCACTGAGAAGAAATGAACCACCACAAAATCTTGTGAGTCTATCACAGAAGATAATAGATCTGACAGGAAAAATGCCTTTGGCTCTGGAAGTGTTTGGTTCGTTTTTGTTTGGCAAGAGGAGGGAGGAGGAATGGGAGGATGCTGTGGAGAAGCTAAGGCGAATTCGCCCCAGGCATCTTCAGGATGTGTTGAAGATAAGTTACGATGCTTTAGATGAAGAAGAGAAGTGTATATTCCTTGATATTGCTTGTTTGTTTGTACAAATGGAAATGAAGCGTGATGATGTGATTGATGTGTTAAGAGGTTGTGGTTTTAGGGGTGAGATTGCTATCACGGTACTTGTGCAGAAATGCTTAATGAAAATCACTCAGGAGAATACTCTGTGGATGCACGACCAAATTAGAGACATGGGTAGGCAAATTGTTGTGGATGAAAGCCTTGTCGATCCTGGTAGGCGTAGTAGACTGTGGGATCGTGCTGAAATCATGCCTGTTTTGAAGGGTCACAAGGGAACTAGATGCGTTCAAGGTATTGTGCTTGATTTTGAGGAAGAAAAATTTTATAAAAGCAAGGACGGGTCAGTTTTTGCGAAGAAGCTTCAATGGAGACCGAGTTTAAGAAATATATCAGGCTACATCAAACAATGCCTTAAGAATCATCTTGAACCTCAAGCAGAGGAGAACAATGAGTTTATACTTCACACGAAATCCTTTGAACCAATGGTTAATCTGAGACAGCTTCAGATCAACAATCTGAAATTACAAGGCAGGTTTCTTCCATCTGAACTGAAGTGGCTACAATGGCAAGGATGCCCTTTAGAAAGCATGCCTTTGAAATCTTGGCCACGAGAGCTGGCTGTCCTTGATCTCAAAAACAGCAAGAAAATGGAAACCTTGTGGGGATGGAATGGTCACAACAAGGTGCCACACAAGTTAATGGTCTTGAACCTCTCCTACTGTATCCAACTCACTGCTATACCTGATTTATCTGGGTGTCAATGTCTAGAGAAGATTGATCTGGAGAACTGCATTAATCTAACTAAGATTCATGAATCAATTGGCGGTTTAAGTACCTTGCGTAGTTTAAATTTGACGCGTTGTTCAAGCCTTATCAACCTTCCCATTGATGTCTCAGGGCTAAAACAGCTAGAGAGTCTTTTTCTTTCTGACTGCTCCAAGTTAAGAGCATTACCAGAAAACATTGGAATCCTGAAATCCTTGAAAGCACTTCATGCTAATAACACTGCTATAGCAGAGTTACCCCAGTCCATTTTTCGCCTGGTGAAACTTGAGCAGCTGTTTTTAGAAGGTTGTCGACATTTGAGAAGGCTCCCTAGTTCTGTAGGACACCTATGTTCTTTGCAAAAATTATCTCTTTATCAGTCTGGGTTAGAAGAATTACCTGACTCTGTTGGATCATTAAATAACCTTGAGACACTCAATTTGATGGGATGTGAATCTCTCACTGTAATTCCTGATTCTATAGGAAATCTCATGTCACTGACAGAACTTCTGTTTGATAGAACTGCAATTAAAGAACTCCCTACTACCGTTGGTTCTTTATCTTACCTGAGGGAATTATCAGTTGGAAACTGTAAACTTCTCACTCAATTGCCAAATTCAATGAAAACATTGGCCTCGGTTGTTGAGCTTCAGTTAGATGGAACAGCCGTCACAATTTTGCCAGATGAGATTGGAGAGATGAAGCTACTGAGGAAACTTAATTTGATGAATTGTAAAAACCTTGAATATTTACCAGAATCTATTGGCCGCCTAGCATCTCTTACTACATTGAACATGGTCAATGGAAATATCAAGGAATTGCCAGAATCCACTGGACGGCTAGAAAATCTTGTCAACTTAAGATTGAACAAATGTAGAATGCTCAGAAAGCTTCCAGCTTCTATAGGAGATTTGAAATCTCTATATCACTTTTACATGGAGGAAACAGCTGTGTCAAGCTTACCTGAAAGCTTTGGGATGCTGTCAAGCTTGAGAACATTGAGAATGGCAAAGAGGCCTGATTTAGATACCAATGAAAATATCTTCCTTGCAGAACCTGTAGAGAACCATAGCCCTTTTGTACTAACATCTTCCTTCTGCAATCTGACCTTGCTAACTGAGTTTGATGCCCGTGCATGGAAAATATCTGGGAAAATTCCAGATGAATTTGAGAAGTTGTCACTATTGGAGACCTTAAAATTTGGCATGAATAATTTTTACAGCCTGCCTTCCAGCTTGAAGGGCCTTTCTATTCTCAAGGTCCTTTCACTGCCAAACTGCACTCAGCTGAACTTTCTCCCCGCACTTCCTTCAAGCTTGATTGAGCTGAATGTTCAAAACTGTTCTTCATTAGAAACTATCCATGACATGTCAAATTTAGAAAGCCTTCAGGAGTTGAATCTCACAAACTGTGTAAAAGTTGGGGATATTCCTGGTCTTGAATGCTTGAAGTCCTTGAGAAGCTTGTACCTGGGTGATTGCATTGCATGCTCCTCACAAATACGCAAGAGACTTTCAAAGGTTGCATTGAGGAATTTACAGAACTTAAGCATGCCAGGAAGCAAATTACCTGAATGGTTTTCTGGAGAAACTGTTAGCTTTTCCAATCGTAAAAATCTAGAGCTAAAGGGTGCACTTGTTGGTGTAATTATTTCTATCAACCATGACATTGATATACCTAACCTGAAGAGAGATGATATGCCTGGATTGATTGATGTTCAAGCAAATGTTCTCAAAGGAGGCAGAACTCGCTTTAGTACAGTGTTAAACACCCGTGGGGTGCCAAGGACAGATGAAGAACACATTCACTTGTGTAGGTACCATGATTACCATCCGTTGGTAGCCTTTTTAAAAGATGCTGATACATTTTGTGTGAGCAAGAGAAATCCACCTTTTGATAAGGGGTTGGAGTTAAAAAAATGTGGTGTTCATTTAATCTTTGAAGGAGATGATGATTATGATGGAGGGGAAGAATCATTGGACAAAGACCTACAATCTGTCTCAGAAAAATTGGCCAATTTTTTCAGCACTCCTGAAGGTGGCGGTCCTGTAATCTGA 4188 0.4222 MIVGRVKCNTVTNTPHMSPATDVISATPGAFRLRWDVFLSFRGADTRGAITKGLYECLQARGVRVFLDDVGLERGEEIAKGLMEGIDDSAAFIVIISENYASSHWCLEELAKICDTRRLLLPVFYRVDPSDVRHQSGPFGKGFESHEKRFKENEVSKWREALKKVGGVAGWVFNHSEEDDLIRRLVTRVLKELSNTPLGVPEFAVGLDKRVGKVMELLQVQSNGVKVLGLYGMGGVGKTTLAKALFNALVNRFEHRCFISNVRQVSSKHDGLVSLQSKIIKDLFLGAGSPSISDVNVGIFAIKRIVSENRVLLVLDDVDDVKQLDVLIGKREWFYDGSCVIITTRDTQVLTQSHVNELYEVRELDDSQALELFSYHALRRNEPPQNLVSLSQKIIDLTGKMPLALEVFGSFLFGKRREEEWEDAVEKLRRIRPRHLQDVLKISYDALDEEEKCIFLDIACLFVQMEMKRDDVIDVLRGCGFRGEIAITVLVQKCLMKITQENTLWMHDQIRDMGRQIVVDESLVDPGRRSRLWDRAEIMPVLKGHKGTRCVQGIVLDFEEEKFYKSKDGSVFAKKLQWRPSLRNISGYIKQCLKNHLEPQAEENNEFILHTKSFEPMVNLRQLQINNLKLQGRFLPSELKWLQWQGCPLESMPLKSWPRELAVLDLKNSKKMETLWGWNGHNKVPHKLMVLNLSYCIQLTAIPDLSGCQCLEKIDLENCINLTKIHESIGGLSTLRSLNLTRCSSLINLPIDVSGLKQLESLFLSDCSKLRALPENIGILKSLKALHANNTAIAELPQSIFRLVKLEQLFLEGCRHLRRLPSSVGHLCSLQKLSLYQSGLEELPDSVGSLNNLETLNLMGCESLTVIPDSIGNLMSLTELLFDRTAIKELPTTVGSLSYLRELSVGNCKLLTQLPNSMKTLASVVELQLDGTAVTILPDEIGEMKLLRKLNLMNCKNLEYLPESIGRLASLTTLNMVNGNIKELPESTGRLENLVNLRLNKCRMLRKLPASIGDLKSLYHFYMEETAVSSLPESFGMLSSLRTLRMAKRPDLDTNENIFLAEPVENHSPFVLTSSFCNLTLLTEFDARAWKISGKIPDEFEKLSLLETLKFGMNNFYSLPSSLKGLSILKVLSLPNCTQLNFLPALPSSLIELNVQNCSSLETIHDMSNLESLQELNLTNCVKVGDIPGLECLKSLRSLYLGDCIACSSQIRKRLSKVALRNLQNLSMPGSKLPEWFSGETVSFSNRKNLELKGALVGVIISINHDIDIPNLKRDDMPGLIDVQANVLKGGRTRFSTVLNTRGVPRTDEEHIHLCRYHDYHPLVAFLKDADTFCVSKRNPPFDKGLELKKCGVHLIFEGDDDYDGGEESLDKDLQSVSEKLANFFSTPEGGGPVI* 1396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02178 1395 Gene3D Ribonuclease Inhibitor 980 1056 IPR032675 -
Lapu3g02178 1395 ProSiteProfiles TIR domain profile. 33 193 IPR000157 GO:0007165
Lapu3g02178 1395 SUPERFAMILY L domain-like 914 1238 - -
Lapu3g02178 1395 SMART LRR_typ_2 921 944 IPR003591 -
Lapu3g02178 1395 SMART LRR_typ_2 968 991 IPR003591 -
Lapu3g02178 1395 SMART LRR_typ_2 756 778 IPR003591 -
Lapu3g02178 1395 SMART LRR_typ_2 827 850 IPR003591 -
Lapu3g02178 1395 SMART LRR_typ_2 874 897 IPR003591 -
Lapu3g02178 1395 SMART LRR_typ_2 1103 1125 IPR003591 -
Lapu3g02178 1395 SMART LRR_typ_2 780 803 IPR003591 -
Lapu3g02178 1395 SMART till_3 34 168 IPR000157 GO:0007165
Lapu3g02178 1395 Pfam TIR domain 35 196 IPR000157 GO:0007165
Lapu3g02178 1395 SMART LRR_CC_2 1170 1196 IPR006553 -
Lapu3g02178 1395 SMART LRR_CC_2 897 924 IPR006553 -
Lapu3g02178 1395 SMART LRR_CC_2 850 877 IPR006553 -
Lapu3g02178 1395 SMART LRR_CC_2 708 735 IPR006553 -
Lapu3g02178 1395 SMART LRR_CC_2 944 971 IPR006553 -
Lapu3g02178 1395 SUPERFAMILY Toll/Interleukin receptor TIR domain 32 171 IPR035897 -
Lapu3g02178 1395 Gene3D - 194 358 IPR027417 -
Lapu3g02178 1395 Gene3D Ribonuclease Inhibitor 596 783 IPR032675 -
Lapu3g02178 1395 Gene3D Ribonuclease Inhibitor 784 979 IPR032675 -
Lapu3g02178 1395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 458 IPR027417 -
Lapu3g02178 1395 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 36 822 IPR044974 GO:0006952
Lapu3g02178 1395 Pfam NB-ARC domain 209 434 IPR002182 GO:0043531
Lapu3g02178 1395 Gene3D - 363 448 IPR042197 -
Lapu3g02178 1395 Gene3D Ribonuclease Inhibitor 1065 1275 IPR032675 -
Lapu3g02178 1395 FunFam Disease resistance protein (TIR-NBS-LRR class) 32 195 - -
Lapu3g02178 1395 Gene3D - 32 193 IPR035897 -
Lapu3g02178 1395 PRINTS Disease resistance protein signature 848 864 - -
Lapu3g02178 1395 PRINTS Disease resistance protein signature 227 242 - -
Lapu3g02178 1395 PRINTS Disease resistance protein signature 398 412 - -
Lapu3g02178 1395 PRINTS Disease resistance protein signature 305 319 - -
Lapu3g02178 1395 SUPERFAMILY L domain-like 505 938 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02178 Lapu-Chr3 42314414 42321401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02178 806 997 WRKY Transcription Factor Family AT4G12020 34.197 3.60e-11 66.2