Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02169 ATGAGTGATGCAAAAGAGAATGAAGAAGCAGGGCAGAATGTACCCTTGGCTGCGGAAGAAATTTTGGCTGAAGCACATGTTCAACCAGAAGTTTTGGCTGCTTCTTTGTCCATAGGGGATACTTCAAATCATGCTGAAAATGGGAAGTTAGAGACAGAGGCACCTGTGGAGGATAAAACTGTGAATCTAGAAGACAATTCAGAGTGCATGCAGCTACAAGATGTCCTAAAAAGTGAAAATACAATAAACTCGGTCCCTGCAATGGACAGTTCTCCAGTTTTAAATAAAATCGAAGGTGAAAATGCATTCGATGTGAAGAGCAAATTAGAAGAACTTCCTCAGTATGGTAAGGACCTAGAGAATGATTCTAATGTTTGTCAAAACAATGCCGATACTGCTGAAATGACTGTGGAGGTGAAACCCAAAGCTTCTGAAGCGGCTGAAAGTAAAACTTACAATAATGGAGACTCCAACTCCGAACTCCCTATTTATAATGAACCTAAAACGTCACATGCTGTTCAAACTGATGTAACAGCTGAAGTCAAGAGTGGATTAGACAATGAGAATAAGTATAATGAAAAGCAGGATGCTGTTGCACATGTAGATAATGGAAATTTGATCTCACAGAATTTGTATTTTTTGGATCCTGACCATTCATATGATGGTAATGAGTCGGGAACAGAAGAGGAGCAGTCAGCTTTTATGAAGGAGCTTGAAACTTTCTTTAGGGAGAGGAGCATGGAATTCAAACCACCCAAGTTCTATAAAGAGGGGCTTAATTGCCTTAAGCTATGGAGATCTGTAAACAGATTGGGCGGCTATGATAAGGTCACCTCATGTAAATTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGTACCACAGTTTCATGGACTTTTCGGGTTTTTTATGAGAAGGCTCTTCTTGACTATGAAAGGCATAAAACAAAAGGTGGTGAGCTGAATGTGCCTATTACTTCTAATTCAGAGCCAATGAATATTGAAAATCAGTGTGTCCAAGGATCAGCATCGTCAGGTAGGGCACGGAGAGATGCTGCGGCTAGGGCTATGCAGGGTTGGCATTCACAACGTCTCCTGGGCAATGGTGAAGTTAGTGATCCTATTATCAAGGAAAGGAGCTCTTTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAGAAGCATCAATGTACTTAAACGCAAGAAATCATCAGACATGGTGAATACAGTCAAAGTTGCTCACAATAAACCATCTAAACCACAATTGGACACATCTGTGGTTGACATTGGACCTCCTGCTGATTGGGTAAAAATCAATGTGCAAAAAACTAAAGATTGTTTTGAGGTCTATGCTTTGGTTCCTGGCCTTCTGCGGGAAGAGGTGCGTGTTCAATCAGACCCAGCTGGACGCTTGGTCATAAGTGGTGAGCCTGAGCATTCTGACAACCCATGGGGGGTGACGCCTTTCAAGAAGGTTGTCAGTTTGCCTTCAAGAATTGATACTCATCAGACATCTGCTGTGGTGACTTTGCATGGACAGTTGTTTGTTCGAGTTCCGTTTGAGCAATCCGAATAG 1581 0.4219 MSDAKENEEAGQNVPLAAEEILAEAHVQPEVLAASLSIGDTSNHAENGKLETEAPVEDKTVNLEDNSECMQLQDVLKSENTINSVPAMDSSPVLNKIEGENAFDVKSKLEELPQYGKDLENDSNVCQNNADTAEMTVEVKPKASEAAESKTYNNGDSNSELPIYNEPKTSHAVQTDVTAEVKSGLDNENKYNEKQDAVAHVDNGNLISQNLYFLDPDHSYDGNESGTEEEQSAFMKELETFFRERSMEFKPPKFYKEGLNCLKLWRSVNRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRVFYEKALLDYERHKTKGGELNVPITSNSEPMNIENQCVQGSASSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKERSSLSVQKREKQLRSINVLKRKKSSDMVNTVKVAHNKPSKPQLDTSVVDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHSDNPWGVTPFKKVVSLPSRIDTHQTSAVVTLHGQLFVRVPFEQSE* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02169 526 SMART ARID_2 225 315 - -
Lapu3g02169 526 CDD ARID 230 315 - -
Lapu3g02169 526 SUPERFAMILY HSP20-like chaperones 435 522 IPR008978 -
Lapu3g02169 526 FunFam AT-rich interactive domain-containing protein 3 228 327 - -
Lapu3g02169 526 SMART bright_3 229 320 IPR001606 GO:0003677
Lapu3g02169 526 FunFam AT-rich interactive domain-containing protein 3 418 526 - -
Lapu3g02169 526 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 84 525 IPR045147 GO:0006357
Lapu3g02169 526 Pfam Hsp20/alpha crystallin family 443 525 IPR002068 -
Lapu3g02169 526 CDD ACD_sHsps_p23-like 445 521 - -
Lapu3g02169 526 Gene3D - 388 526 IPR008978 -
Lapu3g02169 526 SUPERFAMILY ARID-like 223 330 IPR036431 GO:0003677
Lapu3g02169 526 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 426 526 IPR002068 -
Lapu3g02169 526 Gene3D - 228 326 IPR036431 GO:0003677
Lapu3g02169 526 ProSiteProfiles ARID domain profile. 228 319 IPR001606 GO:0003677
Lapu3g02169 526 Pfam ARID/BRIGHT DNA binding domain 231 315 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02169 Lapu-Chr3 42139339 42149773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02169 200 524 ARID Transcription Factor Family AT1G76510 59.816 3.79e-132 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lapu3g02169 HSP20 4.9e-06 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02169 - - gmx:100803374 823.542