Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02161 ATGGACTCTAACACTATCGTTTCATGGCCGAGGATGTCAGAAAACATCGATGGTTTCGGTCTCTCACCCAAGAAATCCGAAGAGGTTCATGTTTTAGCTGTTGATGACAGCATAGTTGATCGCAAAGTCATCGAAAGCTTGCTCAAAGTCTTAGCTTGTAAAGTTACTGCTGTGGATAGTGGGCTGAGAGCACTACAATTGCTTGGACTATTGGACGAGCAGAAAATTCCCTCTGAAACTAATGGTTTTGTTGGTTTAAAGGTGGATCTAATTATCACAGACTACTGTATGCCTGGAATGACAGGTTATGAGTTGCTCAAGAAAATCAAGGAATCTTCCACTTTTAAGGAAACTCCTGTGGTGATTATGTCCTCTGAAAACGTTTTGCCACGCATAGACAGATGTTTGGAAGAGGGTGCAGAGGATTTCATAGTTAAGCCAGTGAAGTTATCTGACGTGAAACGATTGAAGGATTACATGACAACGAAGGAGGCTAAGGTTGAAGGCCAAGACAGGGAAGGGATCCACAAAAGAAAGCTATTAGACACTTCTGATGTGTCATCATCATCATCATCACCACCATCCATTTCCTCATCATCACTTCCATCATCTTCACCCTCAGTGATTGATTCTCCAATCAGACGGCTTAAAAAGACCAGCACTGATTGA 669 0.423 MDSNTIVSWPRMSENIDGFGLSPKKSEEVHVLAVDDSIVDRKVIESLLKVLACKVTAVDSGLRALQLLGLLDEQKIPSETNGFVGLKVDLIITDYCMPGMTGYELLKKIKESSTFKETPVVIMSSENVLPRIDRCLEEGAEDFIVKPVKLSDVKRLKDYMTTKEAKVEGQDREGIHKRKLLDTSDVSSSSSSPPSISSSSLPSSSPSVIDSPIRRLKKTSTD* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02161 222 SUPERFAMILY CheY-like 29 156 IPR011006 -
Lapu3g02161 222 CDD REC_typeA_ARR 31 156 - -
Lapu3g02161 222 SMART REC_2 29 160 IPR001789 GO:0000160
Lapu3g02161 222 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 188 IPR045279 GO:0009736
Lapu3g02161 222 Gene3D - 29 193 - -
Lapu3g02161 222 MobiDBLite consensus disorder prediction 167 222 - -
Lapu3g02161 222 MobiDBLite consensus disorder prediction 184 210 - -
Lapu3g02161 222 Pfam Response regulator receiver domain 31 153 IPR001789 GO:0000160
Lapu3g02161 222 MobiDBLite consensus disorder prediction 167 183 - -
Lapu3g02161 222 ProSiteProfiles Response regulatory domain profile. 30 161 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02161 Lapu-Chr3 41977157 41978276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02161 7 214 Response Regulator Gene Family AT1G59940 57.080 5.64e-70 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu3g02161 Response_reg 1.5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02161 K14492 - gmx:100527828 335.88