Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02156 ATGAAGCGGTCAAGGGATGATGCTTATATGAGTTCACAACCCAAACGGCCTATGGTGTCTTCTAGAGGAGAACCCTCGGGGCAACCACAGATGATGAGTGGTGGTGGTCAGAGACTAACCACAAACGATGCCTTGGCATATCTCAAGGCTGTAAAGGATATGTTTCAAGATAAGAGAGAAAAGTATGATGACTTTCTGGAAGTCATGAAGGATTTCAAGGCTCAAAGAATTGATACAACAGGTGTCATAGCAAGAGTGAAGGAGCTGTTTAAAGGGCACAAAGATCTAATTTTGGGATTTAACACCTTCTTGCCAAAGGGATATGAAATTACACTTCCATTGGAAGATGAACAACCTGCCCAAAAGAAGCCTGTTGAATTTGCAGAAGCCATTAGTTTTGTGGGCAAGATTAAGACTCGCTTTCAGAGCAATGATAGTGTTTATAAGTCATTTCTAGACATATTAAATATGTACAGAAAGGAAACTAAGTCCATCACTGAGGTTTACGAGGAGGTTGCTGCACTCTTCCAGGACCATGCAGACCTTCTTGAGGAGTTTACTCATTTTCTTCCTGATACTTCAGGAACAGCCTCTAATCACTATGCTTCTACTCGAAATCCCCTGCTTCGTGATAGGATCTCTGCAATGCCAACAGTGAGGCAAATGCATGTTGAAAAGAGAGAACGAAATATTGCTTCACATGGTGATCGGGACTTCAGTGCTGACCATCCTGATCCAGAACTTGACAGATGTTTGATTAAGGCTGATAAGGATCAGAGGAGGCGTGGTGAGAAGGAAAAGGAAAGTAGAGAAGACAAAGATAGGAGACAACGGGGAAGGGATGGTAGAGATTATGATCATGATGGTAGTAGGGAGAATTTATCTCACAAGCGGAAATCTGCTTGTAGGGCTGAAGATTCTGGTGCTGAACCATTGCATGATACTGACGAAAATTTTGGCATGCCCCCTGTCTCGTATGCTTGTGAGGATAAAAGTTCTTTGAAAAGTATGTATAGTCCAGTGATTGGTTACCTTGACAAAGTGAAGGACAAATTACGAAATCCCGAGGATTACCAGGAGTTTTTGAAGTGCCTAAACATCTACTGCAAGGAAATAATTGCCCGTCATGAATTGCAATCATTGGTGGGCAATTTACTTGGAAAACATGCTGACCTTTTGGAGGGATTTGATGAATTTTTGTCTCAATGTGAGAAGAATGAAGGATTCCTTGCTGGTCTCCTGAAAAAAAAATCCTTTTGGCACGAAGGACACGGACCAAAACCAATGAAGGTAGAGGACAGGGATCGTGATAGGGATGATGGGATGAAAGAAAGGGACCGTGAATGCCGAGAAAGGGACAAATCCACTGCAATTGCTAACAAGGATGTTTCAGCTCCTAAAATGTCTTTATATGCCAGCAAAGATAAGTATGCAGGAAAACCTATAAATGAGCTGGATCTTTCTAACTGCGAACAATGCACTCCCAGTTATCGTCTTCTACCCAAAAATTACCCAATACCACCAGCCAGCCAGAGAACAGAACTTGGTGCAGAGGTGTTGAATGATCACTGGGTTTCTGTTACTTCTGGCAGTGAGGATTATTCCTTTAAACATATGCGCAAAAATCAGTATGAGGAAAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCTGTAAATGTGGCAACTAAGCGTGTTGAGGAGCTCTTAGAAAAGATTAATGCTAATATAATTAAAGGAGACAGTCCAATTCGTATTGAGGAGCACTTGACAGCTCTAAATCTTAGGTGCATTGAAAGATTATATGGTGATCATGGGCTTGACGTAATGGATGTGCTAAAGAAGAATGCATCTTTAGCTTTGCCAGTCATATTAACCCGCTTGAAGCAGAAACAGGATGAGTGGGCAAGGTGTCGTGCTGATTTTAATAAAGTTTGGGCTGAAATATATGCAAAGAACTACCACAAATCACTTGATCACCGTAGTTTTTACTTTAAGCAGCAGGATACAAAGAGCTTGAGCACTAAAGTTTTACTGGCAGAAATAAAAGAAATTAGTGAGAAGAAACGAAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAACAGACAGCCAATTATTCCTCACTTGGAATTTGTGTATCCTGATCCAGAGATCCATGAAGATCTGTATCAACTCATAAAATATTCCTGTGGAGAAATGTGTACAACTGAACAATTGGATAAAGCTATGAAGATTTGGACAACATTTTTAGAACCCGTGTTTGGAGTTCCTTCTCGATCCCAAGGTCCGGAGGATACAGAAGATGTTGTCAAGGATAAGAATAATTCCGCCAAAAGTGGTACTGAAATTGTTGATGGTGATGGTAGTCCTGTAATGAATCCTAAGAATTTAAACATAAATAGAAATGGGGATGAAAACTTTTCATTTGAACAATCTCATTCCTGCAAACAATGGCAACCAAGTGGACATAATAAGGTTAAGGAGGATAATCATCTTGATTCAGATCGCTTTGCACATAAGGCTGAAGCCTTAGGGAGTAGTACACAGCAGGGTAAAATGAATATAAATACATCCACACCTGATGAAGTATCGAGAGCCAATAAGCAAGATCATTCCACTGAACGGACAGTAAATGCTAATGTCTCACTATCCTCGGGTGTGGAGCAAAGTAATAGAAGAACGAATGTGGATAACACAACAGGACTTGCTGGTACTCCATTAAGACCTGGTAATATATCTTCTGCGGGAGGAGTTGGTTTACCTTCATTAGAGGGTGCTGATTCTACACGACCAGTTACATCCACAAATGGGGCCATCATTGAGGACTCTAAAGTTCACAGATATTGTGAAGAATCAGTGGGACACTTCAGAAGTGAAAGAGAAGAGGGTGAGTTATCACCTAATGGAGACTCTGAAGAGGATAACTTTGCAGCTTATGGACATACTGGTTCGGAGGCAGTTCATAAAGGAAAAGATAGTAACATTTCCCGACAATACCAAAACAGACATGGGGAAGTAGCTCGTGGGGAAGCAGGAGGAGAAAATGATGCTGATGATGAAGGAGAAGAAAGTCCCCATAGATCATTGGAGGACAGTGAAAATGCTTCAGAAAATGGTGATGTTTCTGGTACAGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGAACATGAGGAGGATGGGGATCATGAACATGATAACAAGGCTGAGAGTGAAGGTGAGGCAGAAGGAATGGCTGATGCCAATGATGTTGACGGAGATGGTGCCTCATTGCCATATTCAGAGCGCTTTCTTCTCAATCTAAAGCCTCTGGCGAAGTATGTTCCTCCAACATTGCATGAAAAAGAAAGGACTGGTCGAGTCTTTTATGGAAATGATTCATTTTATCTGCTGTTTAGACTTCATCAGACATTGTATGAGAGGATACGGTCTGCAAAGGTTAACTCATCGTCTGCTGAAAGGAAGTGGAGGGCTTCAAATGATACAAACTCTACCGATCAATATGGCAGGTTTTTGAATGCCCTTTACAATTTACTGGATGGTTCTTCTGATAGTACAAAATTTGAGGATGATTGTCGAGCCATCATTGGAACTCAATCATATGTCTTATTCACATTAGATAAGTTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCTGCCGATGAGATGGATAACAAGCTGCTTCAACTGTATGCATATGAAAAATCAAGAAAACCTGGAAGATTTGTTGATGTAGTTTGTCATGAAAATGCTCGTGTTCTTCTCCATGATGAAAACATATATCGTATTGAATGTTCACCTGCACCTACCCAATTGTCTATTCAACTGATGGACTATGGATTTGATAAACCTGAAGTGACTGCTGTGTCAATGGACCCTAACTTTTCAGCCTATCTGTACAATGACTTCCTATCTGTTGTCCCTGACAAAAAGGAGAAGTCAAGAGTTTACCTGAAGAGGAATAAGCGCAAGTATAGCAGTAGTGATGAATTTTCAAGCCAGACCATGAATGGACTACAAATTGTCAATGGACTGGAGTGTAAGATAGCTTGCACTTCGTCTAAGGTTTCATACGTTTTAGATACTGAAGACCTTTTATATCAAACAAGAAGAAAAAAAAGGAGAACCTTGCATCAGAGCAATTCATGCCTTGAACAATCGAAGTCCTCAATAATTTCTTCAAGCAGAGAACAACGGGTCTGCAAATTATTTTCAATTTGA 4248 0.4061 MKRSRDDAYMSSQPKRPMVSSRGEPSGQPQMMSGGGQRLTTNDALAYLKAVKDMFQDKREKYDDFLEVMKDFKAQRIDTTGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPAQKKPVEFAEAISFVGKIKTRFQSNDSVYKSFLDILNMYRKETKSITEVYEEVAALFQDHADLLEEFTHFLPDTSGTASNHYASTRNPLLRDRISAMPTVRQMHVEKRERNIASHGDRDFSADHPDPELDRCLIKADKDQRRRGEKEKESREDKDRRQRGRDGRDYDHDGSRENLSHKRKSACRAEDSGAEPLHDTDENFGMPPVSYACEDKSSLKSMYSPVIGYLDKVKDKLRNPEDYQEFLKCLNIYCKEIIARHELQSLVGNLLGKHADLLEGFDEFLSQCEKNEGFLAGLLKKKSFWHEGHGPKPMKVEDRDRDRDDGMKERDRECRERDKSTAIANKDVSAPKMSLYASKDKYAGKPINELDLSNCEQCTPSYRLLPKNYPIPPASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVATKRVEELLEKINANIIKGDSPIRIEEHLTALNLRCIERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQDEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKVLLAEIKEISEKKRKEDDVLLAIAAGNRQPIIPHLEFVYPDPEIHEDLYQLIKYSCGEMCTTEQLDKAMKIWTTFLEPVFGVPSRSQGPEDTEDVVKDKNNSAKSGTEIVDGDGSPVMNPKNLNINRNGDENFSFEQSHSCKQWQPSGHNKVKEDNHLDSDRFAHKAEALGSSTQQGKMNINTSTPDEVSRANKQDHSTERTVNANVSLSSGVEQSNRRTNVDNTTGLAGTPLRPGNISSAGGVGLPSLEGADSTRPVTSTNGAIIEDSKVHRYCEESVGHFRSEREEGELSPNGDSEEDNFAAYGHTGSEAVHKGKDSNISRQYQNRHGEVARGEAGGENDADDEGEESPHRSLEDSENASENGDVSGTESADGEECSREHEEDGDHEHDNKAESEGEAEGMADANDVDGDGASLPYSERFLLNLKPLAKYVPPTLHEKERTGRVFYGNDSFYLLFRLHQTLYERIRSAKVNSSSAERKWRASNDTNSTDQYGRFLNALYNLLDGSSDSTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVAADEMDNKLLQLYAYEKSRKPGRFVDVVCHENARVLLHDENIYRIECSPAPTQLSIQLMDYGFDKPEVTAVSMDPNFSAYLYNDFLSVVPDKKEKSRVYLKRNKRKYSSSDEFSSQTMNGLQIVNGLECKIACTSSKVSYVLDTEDLLYQTRRKKRRTLHQSNSCLEQSKSSIISSSREQRVCKLFSI* 1416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02156 1415 SMART hdac_interact2seq4b 489 589 IPR013194 -
Lapu3g02156 1415 MobiDBLite consensus disorder prediction 228 324 - -
Lapu3g02156 1415 MobiDBLite consensus disorder prediction 424 448 - -
Lapu3g02156 1415 MobiDBLite consensus disorder prediction 1013 1095 - -
Lapu3g02156 1415 MobiDBLite consensus disorder prediction 14 38 - -
Lapu3g02156 1415 FunFam Paired amphipathic helix protein SIN3 332 405 - -
Lapu3g02156 1415 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Lapu3g02156 1415 ProSiteProfiles PAH domain profile. 334 403 IPR003822 GO:0006355
Lapu3g02156 1415 MobiDBLite consensus disorder prediction 851 926 - -
Lapu3g02156 1415 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Lapu3g02156 1415 Pfam Paired amphipathic helix repeat 356 400 IPR003822 GO:0006355
Lapu3g02156 1415 Pfam Paired amphipathic helix repeat 147 190 IPR003822 GO:0006355
Lapu3g02156 1415 MobiDBLite consensus disorder prediction 228 313 - -
Lapu3g02156 1415 MobiDBLite consensus disorder prediction 881 915 - -
Lapu3g02156 1415 Coils Coil 558 578 - -
Lapu3g02156 1415 MobiDBLite consensus disorder prediction 1 38 - -
Lapu3g02156 1415 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Lapu3g02156 1415 MobiDBLite consensus disorder prediction 962 985 - -
Lapu3g02156 1415 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Lapu3g02156 1415 MobiDBLite consensus disorder prediction 764 837 - -
Lapu3g02156 1415 SUPERFAMILY PAH2 domain 121 192 IPR036600 GO:0006355
Lapu3g02156 1415 FunFam Paired amphipathic helix SIN3-like protein 122 193 - -
Lapu3g02156 1415 MobiDBLite consensus disorder prediction 851 871 - -
Lapu3g02156 1415 SUPERFAMILY PAH2 domain 338 403 IPR036600 GO:0006355
Lapu3g02156 1415 MobiDBLite consensus disorder prediction 801 829 - -
Lapu3g02156 1415 Pfam C-terminal domain of Sin3a protein 1129 1375 IPR031693 -
Lapu3g02156 1415 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Lapu3g02156 1415 Gene3D Paired amphipathic helix 333 405 IPR036600 GO:0006355
Lapu3g02156 1415 MobiDBLite consensus disorder prediction 1013 1042 - -
Lapu3g02156 1415 FunFam Paired amphipathic helix protein Sin3 43 105 - -
Lapu3g02156 1415 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Lapu3g02156 1415 MobiDBLite consensus disorder prediction 1055 1082 - -
Lapu3g02156 1415 Pfam Sin3 family co-repressor 491 582 IPR013194 -
Lapu3g02156 1415 PANTHER SIN3B-RELATED 38 1273 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02156 Lapu-Chr3 41884120 41895399 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02156 28 119 WRKY Transcription Factor Family AT4G12020 60.638 5.84e-25 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu3g02156 Sin3a_C 9.6e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02156 K11644 - gmx:100781798 2362.03