Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02155 ATGAGTTCACAACCCAAACGGACCGTGATGTCATATCCAATTTCCTTAAGAAGAGAACACTGGATATCCTTAAGAAGACAACAGGGCTGTGGTGTGCGAAGGCTAACCATAAATGACGGCTTGGCATATATCAATGCAGTAAAGGATGTGTTTCGAGATAAGAAAGAAAAATACCTTGACTTTCTGGAAGCTATGAGGGATTTCAAGGCCCAAAGAATTGATGCATCAAGTGCCATAGCAAAAGTGAAGGAGCTGTTTAAAGGGCACAGAGATCTAATTTTACGATTTAACATTTTCTTGCCAAAAGAATGGGAAATTACACTTCCACTGGAGGACAAGCAAGCTCCCCATAATATGCCCATCGAATTCGCTAAAGAAGAACATGATGATATAGACTATGATCATGATAGTAGTAGGGAACATATATCTAACCAGCACAAATCTAGTTGTAGGGCTGAAAACTGTGGTGCTGATCATGATATTGATGAAAATTTTATTGATGAAAATTTTAGCATGCACTCCAATTCATCTCTTTTTGAGTGTACAAGTTCTATGAAAAGAAGGAAGATATCAAGCGAAAATGCTAACACTAGTTTACAACTCAAACGACCCCTAATGTCATCTTGGATCTCCTCTGAAAGAAATCGCATGTGGCAACCACATATGAGGAGTGGTGATGGTCAGAGATTAACCACAAATGATTATGCCTTGGCATATGTGAAAGCAGTAAAGGACGTGTTTCAAGATCAAACAGAAAAGTATCATGACTTTCTAGAAGTTATGTGGGATTTCAAGGCTCAAAGAATTGATACAGCAGGTCTCGTAGAAAGAGTGAAGAAGTTGATTAAAGAGCACAAAGATCTAATTTTGGGCTTTAACACTTTCTTGCCAAAGGAATTTGAAATTACACTTCCATTGGAGGATAAGAAATCTCCCAAATGCTGTTGA 948 0.3819 MSSQPKRTVMSYPISLRREHWISLRRQQGCGVRRLTINDGLAYINAVKDVFRDKKEKYLDFLEAMRDFKAQRIDASSAIAKVKELFKGHRDLILRFNIFLPKEWEITLPLEDKQAPHNMPIEFAKEEHDDIDYDHDSSREHISNQHKSSCRAENCGADHDIDENFIDENFSMHSNSSLFECTSSMKRRKISSENANTSLQLKRPLMSSWISSERNRMWQPHMRSGDGQRLTTNDYALAYVKAVKDVFQDQTEKYHDFLEVMWDFKAQRIDTAGLVERVKKLIKEHKDLILGFNTFLPKEFEITLPLEDKKSPKCC* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02155 315 PANTHER SIN3B-RELATED 225 309 IPR039774 GO:0003714
Lapu3g02155 315 Gene3D Paired amphipathic helix 235 297 IPR036600 GO:0006355
Lapu3g02155 315 Gene3D Paired amphipathic helix 39 101 IPR036600 GO:0006355
Lapu3g02155 315 FunFam Paired amphipathic helix protein Sin3 235 297 - -
Lapu3g02155 315 Pfam Paired amphipathic helix repeat 56 100 IPR003822 GO:0006355
Lapu3g02155 315 Pfam Paired amphipathic helix repeat 252 296 IPR003822 GO:0006355
Lapu3g02155 315 ProSiteProfiles PAH domain profile. 229 299 IPR003822 GO:0006355
Lapu3g02155 315 SUPERFAMILY PAH2 domain 34 102 IPR036600 GO:0006355
Lapu3g02155 315 FunFam Paired amphipathic helix protein Sin3 39 101 - -
Lapu3g02155 315 ProSiteProfiles PAH domain profile. 33 103 IPR003822 GO:0006355
Lapu3g02155 315 SUPERFAMILY PAH2 domain 232 298 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02155 Lapu-Chr3 41871496 41873538 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02155 224 308 WRKY Transcription Factor Family AT4G12020 54.118 9.11e-20 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu3g02155 PAH 9.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02155 K11644 - ccaj:109792823 155.606