Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02146 ATGGATCCTGGTCGCTATGCTCTGCATCAAGGCTGGGATAATAACAGCGCTCTTGATGGATACGGCGCCGTCCACGAGCCGAACTTCCGGGTTGGTGGTTCCTATGACGAGAGAAGGTTTCTAGATGAAAGATATCCAAGGGATCCGGTTTACCAGAGAAATAATTTCCACCCTGATATTTTGGACAGGGACGCCTACCTGCCGCCAGGACCACCCCCCGTTGGCCACTGGAGTCAATCCAAACGGCGAGGTTATGATGAAGATTATCCACTTGACAGGGAATCTAGACGTTTTCAGAGGCCCTATCACGAATCATATAATCAGATAGATGGTTTCAGGGATCGTGAGATTGACACGTACCCAGAATATGAAAGGTTTCGGGATGGCTATACTGGCATTGAAAACTATGGTGACCGAGGATATGATAAACCTGCCAGGTTTGTAGGACATGAACGTGATGATTATGCCTATGAAGATTATGACTACAAGTCCCGGGCATCCTCTCATCATCGAAGGGAGGATAGCCATGATAGGGATTACGAGCATGGTCGGCATAGTTATGATTCTGATTATGAAAGAGGTAGTAGAAGAGACAGTAATTGGAGGCGACGTGAATCGCGTGATCGGGAACGTGATAAGAGAGGTCATAGTCGGGAAGGAGATTTGAGTCCACGTAGGAGGCATGAGCGCTCACGTTCACATTCTCGTTCGCGTTCACGATCTCGATCTCGGTCCCATTCTCACTCCCATTCTCATTCCCGATCTCAATCTCGTGGATATGATGACCATCCAAGGTCTAGGTCCCCTCGAGGTCGAAGCCATGGTAGAAGTTATAGGGAAGGTAGCTATACTGAGAGCCGATATGATAAAAGTGAAAGACGGAGGGATCGTGATGATAAACGGCAGCGGGAGCATTATTCTGTGGCCCCATCTGCAACTGTTGTTGTGAAAGGTCTTTCACAGAAGACAACTGATGAAGATCTATACCAAATACTTGCGGAATGGGGGCCCCTTCGTCACGTTCGTGTTATAAAGGAGAGAAATTCTGGTGTCTCTCGTGGATTTGCGTTTATAGATTTTCCTTCTGTGGGAGCTGCACAGGGAATGATGGACAAACTAGGAGACGATGGTCTTGTTGTCGATGGCAGAAAACTTTTCTTTGAATATAGTAGTAAGCCAACTGGAGGTCCTGGTCCCGATGGAGTTATGAAATCAGGTCATAATTATAAGAGTATCACGGTTCCATCTGATTGGATGTGCACTGTATGTGGCTACATAAATTTTGCACGCCGGACGTCATGCTATCAGTGTAATGAGCCCCGAACTGACGATGCTCCTGCAGCAGATATTTCATCATCAAATTCAGCTGCTACTGGAAAGAAAGGTTTGGAAGCTGGTCCAACTCATGTTTTGGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTTCGCTATGAGTTTTCCAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGATAAGTTCACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTGGAAGATGCTACCAAAGCTCTTGAGGCAACAAATGGAACTATGCTTGAAAAGAATGGGCAGATTCTAAGAGTGGCATATGCAAAAAGTATCCTGGGCCCTGGGTCAGGAACATCAGGAACTTCCCAATCAAGCAGTCTTGCGGCTGCTGCTATTGAGGCTGCGACATTTGCCCAACAGTATGATTCTGTGGGATGGGCTCCAAAAGAATATAATCCGGATGACAAACTATCTACTGGTCCAGATCAACCTGGCACAGAAGTTGGTGCTCCTCAATCAGGCTTTGTTTGGGATGAAGCATCGGGTTATTACTATGATGCTGCTTCTGGTTTTTACTATGATGGAAATACTGGCCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACAACCAAACTCAGCAGTACATACCTTGCACTGATCAGAATCAGAATAAAACACCTAATAATGAGTCTGAACCTTCTAAAACATCTGATGGTTCTGGAAGTAAAAAGGTCATTTCTGCACCAGCTACTACTGTTACATCAGTTGAGAAGCCAGCTTCTTTGGCAGATGCTGTCCAGGCTGCAGCAACAGCTGCTTTAGCTGCAGAGAAGAAAGAAAAAGAAAAATCAAAGGAAATAAAACTTGCATCAAAGAGCAGTATTCTGGCAAACAAGAAAAAAATGAACAATGTATTGACAATGTGGAAGCAGAGGAGTCATGAGGGGCAGGCTACTAGAGTGGCTCTGGAAGATAATCAGCCTTCTATATCAGTTGATGATAGGTCATATTCTGCTGGGCATTCTGCTAAGAATAAGTCAAAAAATGAGACTATGGTAAGGGAAAGTAATGCTTCTAATATTCACACAACTCCTGTCCAGGTTGCTGCTATTGATTCTCAGGCACAGCCTCGACCTGTTAGTAATAGTCTTGGAGGCACTGTGATGGGGGTCATAAGGGGCTCAGGAAGAGGGGTTGTCAAATCAGATACTTATTCAGGTTCTACATCTGTTGCATCATCTATGCAAAGTTCATCTTCAGCAAATGTTGATCCACAGACAGTTGCTACTCCCTTTAGAACAGATGTATCTGCCCTGGGTTCTTATACACCATCTGCAACTGTTGGAAGTGGCCGAAGAAGGTTTTCAGAAATGCCTCTTCCTGCTTCAGCTCACAAGGAACAACCTCAAACAACTTACCGGGATCGTGCAGCTGAGAGGAGGAGTTTGTATGGCTCATCATCTTCAGTTGGAAATGATTTTGCTGATCTTGACATTGGGGATTCAAACCGAGATTTTACATCAAGGAAGGGTGATCCAATGCCATTCCCTCCTGGGGTTGGTGGTGGACGTGTAGTTGGAGATGTCAACATTGATACTTTTGAGGTGATTACGGCAGACAAAGCAATTGATGAAAACAATGTCGGTAATAGGATGCTTCGCAACATGGGCTGGCAGGAAGGATTGGTACCGTTTCGTTCCCTCTTCATTACATAG 3042 0.449 MDPGRYALHQGWDNNSALDGYGAVHEPNFRVGGSYDERRFLDERYPRDPVYQRNNFHPDILDRDAYLPPGPPPVGHWSQSKRRGYDEDYPLDRESRRFQRPYHESYNQIDGFRDREIDTYPEYERFRDGYTGIENYGDRGYDKPARFVGHERDDYAYEDYDYKSRASSHHRREDSHDRDYEHGRHSYDSDYERGSRRDSNWRRRESRDRERDKRGHSREGDLSPRRRHERSRSHSRSRSRSRSRSHSHSHSHSRSQSRGYDDHPRSRSPRGRSHGRSYREGSYTESRYDKSERRRDRDDKRQREHYSVAPSATVVVKGLSQKTTDEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAQGMMDKLGDDGLVVDGRKLFFEYSSKPTGGPGPDGVMKSGHNYKSITVPSDWMCTVCGYINFARRTSCYQCNEPRTDDAPAADISSSNSAATGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTMLEKNGQILRVAYAKSILGPGSGTSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKLSTGPDQPGTEVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDNQTQQYIPCTDQNQNKTPNNESEPSKTSDGSGSKKVISAPATTVTSVEKPASLADAVQAAATAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQPSISVDDRSYSAGHSAKNKSKNETMVRESNASNIHTTPVQVAAIDSQAQPRPVSNSLGGTVMGVIRGSGRGVVKSDTYSGSTSVASSMQSSSSANVDPQTVATPFRTDVSALGSYTPSATVGSGRRRFSEMPLPASAHKEQPQTTYRDRAAERRSLYGSSSSVGNDFADLDIGDSNRDFTSRKGDPMPFPPGVGGGRVVGDVNIDTFEVITADKAIDENNVGNRMLRNMGWQEGLVPFRSLFIT* 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02146 1013 SMART zf_4 416 440 IPR001876 -
Lapu3g02146 1013 MobiDBLite consensus disorder prediction 62 86 - -
Lapu3g02146 1013 CDD OCRE_SUA_like 608 660 IPR035623 -
Lapu3g02146 1013 ProSitePatterns Zinc finger RanBP2-type signature. 418 437 IPR001876 -
Lapu3g02146 1013 SUPERFAMILY RNA-binding domain, RBD 467 556 IPR035979 GO:0003676
Lapu3g02146 1013 MobiDBLite consensus disorder prediction 845 868 - -
Lapu3g02146 1013 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 373 IPR000504 GO:0003723
Lapu3g02146 1013 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 471 537 IPR000504 GO:0003723
Lapu3g02146 1013 SUPERFAMILY Ran binding protein zinc finger-like 409 444 IPR036443 -
Lapu3g02146 1013 MobiDBLite consensus disorder prediction 660 687 - -
Lapu3g02146 1013 SUPERFAMILY RNA-binding domain, RBD 301 396 IPR035979 GO:0003676
Lapu3g02146 1013 MobiDBLite consensus disorder prediction 229 253 - -
Lapu3g02146 1013 MobiDBLite consensus disorder prediction 587 611 - -
Lapu3g02146 1013 MobiDBLite consensus disorder prediction 254 306 - -
Lapu3g02146 1013 MobiDBLite consensus disorder prediction 163 309 - -
Lapu3g02146 1013 SMART rrm1_1 313 388 IPR000504 GO:0003723
Lapu3g02146 1013 SMART rrm1_1 470 545 IPR000504 GO:0003723
Lapu3g02146 1013 Gene3D - 447 571 IPR012677 -
Lapu3g02146 1013 Pfam OCRE domain 611 659 IPR041591 -
Lapu3g02146 1013 Gene3D - 291 397 IPR012677 -
Lapu3g02146 1013 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 392 IPR000504 GO:0003723
Lapu3g02146 1013 ProSiteProfiles Zinc finger RanBP2 type profile. 414 443 IPR001876 -
Lapu3g02146 1013 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 469 549 IPR000504 GO:0003723
Lapu3g02146 1013 MobiDBLite consensus disorder prediction 163 228 - -
Lapu3g02146 1013 MobiDBLite consensus disorder prediction 772 794 - -
Lapu3g02146 1013 CDD RRM1_RRM2_RBM5_like 467 547 - -
Lapu3g02146 1013 Gene3D - 412 444 - -
Lapu3g02146 1013 PANTHER RNA-BINDING PROTEIN 202 1003 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02146 Lapu-Chr3 41698775 41706921 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02146 311 533 Eukaryotic Initiation Factors Gene Family AT2G36660 24.800 8.21e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02146 K13094 - gmx:100787998 1628.99