Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02131 ATGAGTTCATTCTCCATCACACGGAAAAAAACACCATTCCAGAAGCATAGAGAAGAAGAGGAGGCAAAGAAGAAGAGAGCGGAGGATGAGACTGCTCGCTTGTATGCTGAGTTTGTAGAGTCGTTCCAAGGAGATACTACTCCGGGGTCAAAAACTTTTGTTCGTGGAGGAACAATTAATCCTAATGACAGATTTAAAGATGATTCTGAGGGTGAAAAGTCCAAAGATGGGGTATCTGTTCCAAAGAAGGGAAGTAGGTACGTGCCATCTTTTATTCCACCTCCAATGGCAACCAAGGGGAAAGAATCTGAAAGGAAAAAAGAGGAGGAAAAGCCAAAGGAGAAAGAGAAAGGGAAGTCAAGAAATATCGATCATTTTATGGAGGAGCTAAAGCATGAGCAAGAGATGAGGGAGAGGCGAAATCAAGAACGTGAGCATTGGCGTGATGGTCGTCATGCAGAACATTCTACTTCCAGTCGCTTTGACGAGCTGCCTGATGACTTTGACCCTAGTGGAAAACTTCCAGGATCATTTGATGATGGTGACCCTCAAACTACGAATCTTTATGTTGGAAATCTCTCACCCAAGGTTGATGAAAATTTTCTTCTCCGTACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATTATGTGGCCAAGGACAGAGGAGGAGCGAAGGCGGCAAAGAAACTGTGGCTTTGTAGCTTTCATGAACAGAGCTGATGGACAGGCAGCGAAAGATGAAATGCAAGGAGTGGTGGTTTATGAATATGAATTGAAAATTGGATGGGGAAGGTCTGTTGCTCTCCCATCGCAAGCACTACCTGCACCTCCACCAGGGCATATGGCCATCAGGAGTAAGGAGGGTAGTACTGTGATATTGTCTGGTCCTTCAGGTCCACCATTAACATCCGTGCCTAATCAGAATTCTGAACTGGTTCTAACTCCTAATGTTCCTGATATAATGGTTACTCCTCCTGAGGATGAACATTTAAGGCATTTAATTGATACAATGGCTTTGTATGTCCTGGATGGAGGATGTGCTTTTGAACAAGCTATTATGGAGAGGGGTCGTGGCAATCCTCTTTTCAACTTCTTGTTTGTCCTTGGCTCAAAGGAACATACCTACTATGTTTGGAGACTCTACTCATTTGCCCAGGGTGATACCCTTCAAAGATGGAGGACTGAACCTTTTATCATGATAACGGGTAGTGGAAGATGGATTCCTCCCTCGTTACCAACATCAAAAAGTCCGGAACATGAAAAGGAGCCTGGTTCCACACATGCTGGCGGAAGAAGCAGGCGTGTTGAGCCTGAAAGAACACTGACCGATGCACAGAGGGATGAATTTGAGGATATGCTGCGTGCTTTAACATTAGAGAGGAGCCAGATAAAAGAGGCTATGGGGTTTTCTTTGGATAATGCTGATGCAGCTGGCGAGATAGTTGAAGTCTTGACTGAATCCTTGACACTTAAAGAAACCCCCATTCCAACTAAAATTGCAAGGCTTATGCTTGTCTCTGATATTCTTCATAATAGTAGTGCTCCTGTAAGAAATGCGTCAGCATATCGCACCAAGTTTGAAGCAACATTACCGGATATAATGGAGAGTTTTAATGACTTGTATCGTAGCATAATGGGGCGTATTACTGCTGAAGCCCTAAAGGAACGAGTGCTGAAAGTTTTACAAGTTTGGGCGGACTGGTTTCTATTTTCAGATGCCTATGTGAATGGCTTAAGAGCTACTTTTCTTCGACCTGGGAACTCTGGTGTAATTCCATTCCATTCCATATGTGGGGATGCACCTGAGATTGAGCAGAAGACCACTTCTGAAGATATAGTTGGTGGCAAGACCAACCAAGATGCTGCATTGGCAATGGGTCGAGGGGCTGCAATGAAGGAGCTAATGAGTCTTCCTCTTGCTGAGCTGGAAAGACGGTGCCGACACAATGGATTGTCACTTGTTGGTGGTAGAGAAATGATGGTTGCACGGTTGTTAAGTCTTGAAGAGGCAGAAAAGCAGAGAGGTTATGAACTAGACGATGAGTTGAAATATGCCCACAACCAAGTGAGTTCTGGGAAGTATTCAAGTAATCGGCAAGAAACAAGTGCAGAGCCTGAACCAGTAGGACTTTCTGCATGGAACCAGTATGGGGACGAAGATTTGCAGTCACAGAGCAGAAGTTCTGTATCTTTAGCCCCTACACTTCCTATACCACAACCTGAACTTAAGGCTTTCACAAAAAAGGAAAAGAGTGATCCAGTTCTGCCAGCCTCTAAATGGGCTCGGGAGGATGATGAGAGTGATGATGAACAAAGGAGAGGTGGAAAAAATCTTGGCTTAAGTTACTCATCCTCTGGTAGTGAGAATGTGGATGATGGTCTCATTAAAGCTGATGAATCAGAGTCTGCAGCTGGTACTAGTTTTCCAGTTCATGCTGACAGTGGAATGAATGAAGAGCAGAGGCAAAAGCTAAGACGCTTGGAGGTTGCTTTAATTGAATACCGTGAATCTCTAGAAGAAAGGGGAATTAAGAATTTGGAGGAAATTGACAAGAAAGTTGAGTCACATCGGAAACGGCTGCAAGCAGAATATGGATTATCAGATTCTGGTGAAGATGGTAAAAGCAATAGAAGAACTTCAGAGAAGAGGGATAGGCATGATGTCTCAAGGAAACGGCACCGAAGCCGAAGTCCAAGTGATAGTCCACAACAAAAATTATCTGGAAAAGACAAGGACAGAGAACATGATTTAGAAAGGGATCGAGACAGGCAAAGGGACAGAAATTATGATTTTGATATTGAAAGAGGAAAGGACCGGCATCGGGAAAAGAGTGGAAGCAGAGAGAGGGATGATCATGATAAGGATAGAAGCAGGGATAGGGACAGGGAAAGGAGAAGACGGACCAAATAA 2916 0.4396 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDTTPGSKTFVRGGTINPNDRFKDDSEGEKSKDGVSVPKKGSRYVPSFIPPPMATKGKESERKKEEEKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHAEHSTSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGRSVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGPPLTSVPNQNSELVLTPNVPDIMVTPPEDEHLRHLIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPTSKSPEHEKEPGSTHAGGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRPGNSGVIPFHSICGDAPEIEQKTTSEDIVGGKTNQDAALAMGRGAAMKELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAHNQVSSGKYSSNRQETSAEPEPVGLSAWNQYGDEDLQSQSRSSVSLAPTLPIPQPELKAFTKKEKSDPVLPASKWAREDDESDDEQRRGGKNLGLSYSSSGSENVDDGLIKADESESAAGTSFPVHADSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIDKKVESHRKRLQAEYGLSDSGEDGKSNRRTSEKRDRHDVSRKRHRSRSPSDSPQQKLSGKDKDREHDLERDRDRQRDRNYDFDIERGKDRHREKSGSRERDDHDKDRSRDRDRERRRRTK* 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02131 971 Gene3D Surp module 321 390 IPR035967 GO:0003723|GO:0006396
Lapu3g02131 971 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 267 IPR000504 GO:0003723
Lapu3g02131 971 MobiDBLite consensus disorder prediction 743 822 - -
Lapu3g02131 971 Gene3D - 96 269 IPR012677 -
Lapu3g02131 971 Pfam Surp module 333 385 IPR000061 GO:0003723|GO:0006396
Lapu3g02131 971 MobiDBLite consensus disorder prediction 11 35 - -
Lapu3g02131 971 MobiDBLite consensus disorder prediction 895 964 - -
Lapu3g02131 971 Coils Coil 819 839 - -
Lapu3g02131 971 CDD cwf21_RRC1-like 818 867 IPR047491 -
Lapu3g02131 971 CDD RRM_SR140 185 268 IPR035009 -
Lapu3g02131 971 MobiDBLite consensus disorder prediction 43 57 - -
Lapu3g02131 971 Pfam cwf21 domain 819 865 IPR013170 -
Lapu3g02131 971 Coils Coil 448 468 - -
Lapu3g02131 971 SUPERFAMILY ENTH/VHS domain 447 584 IPR008942 -
Lapu3g02131 971 PANTHER RNA PROCESSING PROTEIN LD23810P 1 902 - -
Lapu3g02131 971 SUPERFAMILY Surp module (SWAP domain) 309 390 IPR035967 GO:0003723|GO:0006396
Lapu3g02131 971 SMART 558neu5 450 585 IPR006569 -
Lapu3g02131 971 MobiDBLite consensus disorder prediction 1 185 - -
Lapu3g02131 971 Gene3D - 443 589 IPR008942 -
Lapu3g02131 971 Coils Coil 845 865 - -
Lapu3g02131 971 Coils Coil 17 37 - -
Lapu3g02131 971 MobiDBLite consensus disorder prediction 61 80 - -
Lapu3g02131 971 MobiDBLite consensus disorder prediction 410 443 - -
Lapu3g02131 971 SUPERFAMILY RNA-binding domain, RBD 179 274 IPR035979 GO:0003676
Lapu3g02131 971 ProSiteProfiles SAP motif profile. 636 670 IPR003034 -
Lapu3g02131 971 ProSiteProfiles SURP motif repeat profile. 335 378 IPR000061 GO:0003723|GO:0006396
Lapu3g02131 971 SMART rrm1_1 187 263 IPR000504 GO:0003723
Lapu3g02131 971 ProSiteProfiles CID domain profile. 443 588 IPR006569 -
Lapu3g02131 971 MobiDBLite consensus disorder prediction 690 706 - -
Lapu3g02131 971 MobiDBLite consensus disorder prediction 842 888 - -
Lapu3g02131 971 SMART cwf21_2 818 867 IPR013170 -
Lapu3g02131 971 MobiDBLite consensus disorder prediction 417 443 - -
Lapu3g02131 971 Gene3D - 818 869 - -
Lapu3g02131 971 MobiDBLite consensus disorder prediction 745 777 - -
Lapu3g02131 971 MobiDBLite consensus disorder prediction 842 971 - -
Lapu3g02131 971 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 260 IPR000504 GO:0003723
Lapu3g02131 971 SMART surpneu2 333 387 IPR000061 GO:0003723|GO:0006396
Lapu3g02131 971 Pfam CID domain 450 578 IPR006569 -
Lapu3g02131 971 MobiDBLite consensus disorder prediction 690 715 - -
Lapu3g02131 971 MobiDBLite consensus disorder prediction 99 169 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02131 183 263 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 3.01e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02131 K12842 - gmx:100776093 1712.97